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Items: 1 to 20 of 219

1.

Conservation of core gene expression in vertebrate tissues.

Chan ET, Quon GT, Chua G, Babak T, Trochesset M, Zirngibl RA, Aubin J, Ratcliffe MJ, Wilde A, Brudno M, Morris QD, Hughes TR.

J Biol. 2009;8(3):33. doi: 10.1186/jbiol130. Epub 2009 Apr 16.

2.
3.

A novel conserved evx1 enhancer links spinal interneuron morphology and cis-regulation from fish to mammals.

Suster ML, Kania A, Liao M, Asakawa K, Charron F, Kawakami K, Drapeau P.

Dev Biol. 2009 Jan 15;325(2):422-33. doi: 10.1016/j.ydbio.2008.10.004. Epub 2008 Oct 18.

4.

In vivo enhancer analysis of human conserved non-coding sequences.

Pennacchio LA, Ahituv N, Moses AM, Prabhakar S, Nobrega MA, Shoukry M, Minovitsky S, Dubchak I, Holt A, Lewis KD, Plajzer-Frick I, Akiyama J, De Val S, Afzal V, Black BL, Couronne O, Eisen MB, Visel A, Rubin EM.

Nature. 2006 Nov 23;444(7118):499-502. Epub 2006 Nov 5.

PMID:
17086198
5.

Regulation of vertebrate corticotropin-releasing factor genes.

Yao M, Denver RJ.

Gen Comp Endocrinol. 2007 Aug-Sep;153(1-3):200-16. Epub 2007 Feb 17. Review.

PMID:
17382944
6.

Evolutionary conservation of expression profiles between human and mouse orthologous genes.

Liao BY, Zhang J.

Mol Biol Evol. 2006 Mar;23(3):530-40. Epub 2005 Nov 9.

PMID:
16280543
7.

The nuclear OXPHOS genes in insecta: a common evolutionary origin, a common cis-regulatory motif, a common destiny for gene duplicates.

Porcelli D, Barsanti P, Pesole G, Caggese C.

BMC Evol Biol. 2007 Nov 8;7:215. doi: 10.1186/1471-2148-7-215.

8.

Alignment and prediction of cis-regulatory modules based on a probabilistic model of evolution.

He X, Ling X, Sinha S.

PLoS Comput Biol. 2009 Mar;5(3):e1000299. doi: 10.1371/journal.pcbi.1000299. Epub 2009 Mar 13.

9.

Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same.

Weirauch MT, Hughes TR.

Trends Genet. 2010 Feb;26(2):66-74. doi: 10.1016/j.tig.2009.12.002. Epub 2010 Jan 18. Review.

PMID:
20083321
10.

even-skipped has gap-like, pair-rule-like, and segmental functions in the cricket Gryllus bimaculatus, a basal, intermediate germ insect (Orthoptera).

Mito T, Kobayashi C, Sarashina I, Zhang H, Shinahara W, Miyawaki K, Shinmyo Y, Ohuchi H, Noji S.

Dev Biol. 2007 Mar 1;303(1):202-13. Epub 2006 Nov 10.

11.

CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes.

Hestand MS, van Galen M, Villerius MP, van Ommen GJ, den Dunnen JT, 't Hoen PA.

BMC Bioinformatics. 2008 Nov 26;9:495. doi: 10.1186/1471-2105-9-495.

12.

Assessing the conservation of mammalian gene expression using high-density exon arrays.

Xing Y, Ouyang Z, Kapur K, Scott MP, Wong WH.

Mol Biol Evol. 2007 Jun;24(6):1283-5. Epub 2007 Mar 25. Erratum in: Mol Biol Evol. 2007 Jul;24(7):1577.

PMID:
17387099
13.

cis-Regulatory remodeling of the SCL locus during vertebrate evolution.

Gƶttgens B, Ferreira R, Sanchez MJ, Ishibashi S, Li J, Spensberger D, Lefevre P, Ottersbach K, Chapman M, Kinston S, Knezevic K, Hoogenkamp M, Follows GA, Bonifer C, Amaya E, Green AR.

Mol Cell Biol. 2010 Dec;30(24):5741-51. doi: 10.1128/MCB.00870-10. Epub 2010 Oct 18.

14.

Identifying synonymous regulatory elements in vertebrate genomes.

Ovcharenko I, Nobrega MA.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W403-7.

15.

Conserved co-expression for candidate disease gene prioritization.

Oti M, van Reeuwijk J, Huynen MA, Brunner HG.

BMC Bioinformatics. 2008 Apr 23;9:208. doi: 10.1186/1471-2105-9-208.

16.

Definition, conservation and epigenetics of housekeeping and tissue-enriched genes.

She X, Rohl CA, Castle JC, Kulkarni AV, Johnson JM, Chen R.

BMC Genomics. 2009 Jun 17;10:269. doi: 10.1186/1471-2164-10-269.

17.

Analysis of temporal expression pattern and cis-regulatory sequences of chicken pepsinogen A and C.

Sakamoto N, Saiga H, Yasugi S.

Biochem Biophys Res Commun. 1998 Sep 18;250(2):420-4.

PMID:
9753645
18.
19.

ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.

Loots G, Ovcharenko I.

Bioinformatics. 2007 Jan 1;23(1):122-4. Epub 2006 Nov 7.

PMID:
17090579
20.

A comparative analysis of divergently-paired genes (DPGs) among Drosophila and vertebrate genomes.

Yang L, Yu J.

BMC Evol Biol. 2009 Mar 11;9:55. doi: 10.1186/1471-2148-9-55.

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