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Items: 1 to 20 of 197

1.

A probabilistic graph-theoretic approach to integrate multiple predictions for the protein-protein subnetwork prediction challenge.

Chua HN, Hugo W, Liu G, Li X, Wong L, Ng SK.

Ann N Y Acad Sci. 2009 Mar;1158:224-33. doi: 10.1111/j.1749-6632.2008.03760.x.

PMID:
19348644
2.

A Bayesian networks approach for predicting protein-protein interactions from genomic data.

Jansen R, Yu H, Greenbaum D, Kluger Y, Krogan NJ, Chung S, Emili A, Snyder M, Greenblatt JF, Gerstein M.

Science. 2003 Oct 17;302(5644):449-53.

3.

Integrating functional genomics data.

Lee I, Marcotte EM.

Methods Mol Biol. 2008;453:267-78. doi: 10.1007/978-1-60327-429-6_14.

PMID:
18712309
4.
5.

Protein complex prediction based on mutually exclusive interactions in protein interaction network.

Jung SH, Jang WH, Hur HY, Hyun B, Han DS.

Genome Inform. 2008;21:77-88.

6.

Analyzing yeast protein-protein interaction data obtained from different sources.

Bader GD, Hogue CW.

Nat Biotechnol. 2002 Oct;20(10):991-7.

PMID:
12355115
7.

Identifying protein complexes using hybrid properties.

Chen L, Shi X, Kong X, Zeng Z, Cai YD.

J Proteome Res. 2009 Nov;8(11):5212-8. doi: 10.1021/pr900554a.

PMID:
19764809
8.

Supervised enzyme network inference from the integration of genomic data and chemical information.

Yamanishi Y, Vert JP, Kanehisa M.

Bioinformatics. 2005 Jun;21 Suppl 1:i468-77.

PMID:
15961492
9.

Social behavior of the yeast protein-protein interaction network.

Seshasayee AS.

In Silico Biol. 2006;6(1-2):127-30.

PMID:
16789919
10.

Combining multisource information through functional-annotation-based weighting: gene function prediction in yeast.

Ray SS, Bandyopadhyay S, Pal SK.

IEEE Trans Biomed Eng. 2009 Feb;56(2):229-36. doi: 10.1109/TBME.2008.2005955. Epub 2008 Sep 30.

PMID:
19272921
11.

Pushing structural information into the yeast interactome by high-throughput protein docking experiments.

Mosca R, Pons C, Fernández-Recio J, Aloy P.

PLoS Comput Biol. 2009 Aug;5(8):e1000490. doi: 10.1371/journal.pcbi.1000490. Epub 2009 Aug 28.

12.

Assessment of protein set coherence using functional annotations.

Chagoyen M, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2008 Oct 20;9:444. doi: 10.1186/1471-2105-9-444.

13.

A computationally guided protein-interaction screen uncovers coiled-coil interactions involved in vesicular trafficking.

Zhang H, Chen J, Wang Y, Peng L, Dong X, Lu Y, Keating AE, Jiang T.

J Mol Biol. 2009 Sep 11;392(1):228-41. doi: 10.1016/j.jmb.2009.07.006. Epub 2009 Jul 8.

PMID:
19591838
14.

Large-scale assessment of the effect of popularity on the reliability of research.

Pfeiffer T, Hoffmann R.

PLoS One. 2009 Jun 24;4(6):e5996. doi: 10.1371/journal.pone.0005996.

15.

Probabilistic prediction and ranking of human protein-protein interactions.

Scott MS, Barton GJ.

BMC Bioinformatics. 2007 Jul 5;8:239.

16.

Constraints imposed by non-functional protein-protein interactions on gene expression and proteome size.

Zhang J, Maslov S, Shakhnovich EI.

Mol Syst Biol. 2008;4:210. doi: 10.1038/msb.2008.48. Epub 2008 Aug 5.

17.

Hierarchical multi-label prediction of gene function.

Barutcuoglu Z, Schapire RE, Troyanskaya OG.

Bioinformatics. 2006 Apr 1;22(7):830-6. Epub 2006 Jan 12.

PMID:
16410319
18.

Identification of functional modules in a PPI network by clique percolation clustering.

Zhang S, Ning X, Zhang XS.

Comput Biol Chem. 2006 Dec;30(6):445-51. Epub 2006 Nov 13.

PMID:
17098476
19.

An E-MAP of the ER.

Conibear E.

Cell. 2005 Nov 4;123(3):366-8.

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