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Items: 1 to 20 of 110

1.

SNPit: a federated data integration system for the purpose of functional SNP annotation.

Shen TH, Carlson CS, Tarczy-Hornoch P.

Comput Methods Programs Biomed. 2009 Aug;95(2):181-9. doi: 10.1016/j.cmpb.2009.02.010. Epub 2009 Mar 26.

2.

SNP Function Portal: a web database for exploring the function implication of SNP alleles.

Wang P, Dai M, Xuan W, McEachin RC, Jackson AU, Scott LJ, Athey B, Watson SJ, Meng F.

Bioinformatics. 2006 Jul 15;22(14):e523-9.

PMID:
16873516
3.

SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation.

Panitz F, Stengaard H, Hornshøj H, Gorodkin J, Hedegaard J, Cirera S, Thomsen B, Madsen LB, Høj A, Vingborg RK, Zahn B, Wang X, Wang X, Wernersson R, Jørgensen CB, Scheibye-Knudsen K, Arvin T, Lumholdt S, Sawera M, Green T, Nielsen BJ, Havgaard JH, Brunak S, Fredholm M, Bendixen C.

Bioinformatics. 2007 Jul 1;23(13):i387-91.

PMID:
17646321
4.

LS-SNP: large-scale annotation of coding non-synonymous SNPs based on multiple information sources.

Karchin R, Diekhans M, Kelly L, Thomas DJ, Pieper U, Eswar N, Haussler D, Sali A.

Bioinformatics. 2005 Jun 15;21(12):2814-20. Epub 2005 Apr 12.

PMID:
15827081
5.

SNP2NMD: a database of human single nucleotide polymorphisms causing nonsense-mediated mRNA decay.

Han A, Kim WY, Park SM.

Bioinformatics. 2007 Feb 1;23(3):397-9. Epub 2006 Nov 22.

PMID:
17121775
6.

SNP@Promoter: a database of human SNPs (single nucleotide polymorphisms) within the putative promoter regions.

Kim BC, Kim WY, Park D, Chung WH, Shin KS, Bhak J.

BMC Bioinformatics. 2008;9 Suppl 1:S2. doi: 10.1186/1471-2105-9-S1-S2.

7.

Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation.

Klee K, Ernst R, Spannagl M, Mayer KF.

BMC Bioinformatics. 2007 Aug 30;8:320.

8.

Development of an integrated laboratory information management system for the maize mapping project.

Sanchez-Villeda H, Schroeder S, Polacco M, McMullen M, Havermann S, Davis G, Vroh-Bi I, Cone K, Sharopova N, Yim Y, Schultz L, Duru N, Musket T, Houchins K, Fang Z, Gardiner J, Coe E.

Bioinformatics. 2003 Nov 1;19(16):2022-30.

PMID:
14594706
9.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

10.

TAMAL: an integrated approach to choosing SNPs for genetic studies of human complex traits.

Hemminger BM, Saelim B, Sullivan PF.

Bioinformatics. 2006 Mar 1;22(5):626-7. Epub 2006 Jan 17.

PMID:
16418238
11.

SNPLims: a data management system for genome wide association studies.

Orro A, Guffanti G, Salvi E, Macciardi F, Milanesi L.

BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S13. doi: 10.1186/1471-2105-9-S2-S13.

12.

MutaGeneSys: estimating individual disease susceptibility based on genome-wide SNP array data.

Stoyanovich J, Pe'er I.

Bioinformatics. 2008 Feb 1;24(3):440-2. Epub 2007 Nov 29.

PMID:
18048395
13.
14.

IntegratedMap: a Web interface for integrating genetic map data.

Yang H, Wang H, Gingle AR.

Bioinformatics. 2005 May 1;21(9):2126-7. Epub 2005 Jan 18.

PMID:
15657101
15.

Snat: a SNP annotation tool for bovine by integrating various sources of genomic information.

Jiang J, Jiang L, Zhou B, Fu W, Liu JF, Zhang Q.

BMC Genet. 2011 Oct 7;12:85. doi: 10.1186/1471-2156-12-85.

16.

Evaluating the accuracy of a functional SNP annotation system.

Shen TH, Carlson CS, Tarczy-Hornoch P.

BMC Bioinformatics. 2009 Sep 17;10 Suppl 9:S11. doi: 10.1186/1471-2105-10-S9-S11.

17.

MSQT for choosing SNP assays from multiple DNA alignments.

Warthmann N, Fitz J, Weigel D.

Bioinformatics. 2007 Oct 15;23(20):2784-7. Epub 2007 Sep 4.

PMID:
17785349
18.

Evaluation of probabilistic and logical inference for a SNP annotation system.

Shen TH, Tarczy-Hornoch P, Detwiler LT, Cadag E, Carlson CS.

J Biomed Inform. 2010 Jun;43(3):407-18. doi: 10.1016/j.jbi.2009.12.002. Epub 2009 Dec 14.

19.

Visualization of genomic aberrations using Affymetrix SNP arrays.

Müller A, Holzmann K, Kestler HA.

Bioinformatics. 2007 Feb 15;23(4):496-7. Epub 2006 Nov 30.

PMID:
17138589
20.

A personalized and automated dbSNP surveillance system.

Liu S, Lin S, Woon M, Klein TE, Altman RB.

Proc IEEE Comput Soc Bioinform Conf. 2003;2:132-6.

PMID:
16452787

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