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Items: 1 to 20 of 79

1.

Finding genes in Schistosoma japonicum: annotating novel genomes with help of extrinsic evidence.

Brejová B, Vinar T, Chen Y, Wang S, Zhao G, Brown DG, Li M, Zhou Y.

Nucleic Acids Res. 2009 Apr;37(7):e52. doi: 10.1093/nar/gkp052. Epub 2009 Mar 5.

2.

Origin of a novel protein-coding gene family with similar signal sequence in Schistosoma japonicum.

Mbanefo EC, Chuanxin Y, Kikuchi M, Shuaibu MN, Boamah D, Kirinoki M, Hayashi N, Chigusa Y, Osada Y, Hamano S, Hirayama K.

BMC Genomics. 2012 Jun 20;13:260. doi: 10.1186/1471-2164-13-260.

4.

ExonHunter: a comprehensive approach to gene finding.

Brejová B, Brown DG, Li M, Vinar T.

Bioinformatics. 2005 Jun;21 Suppl 1:i57-65.

PMID:
15961499
5.

mGene: accurate SVM-based gene finding with an application to nematode genomes.

Schweikert G, Zien A, Zeller G, Behr J, Dieterich C, Ong CS, Philips P, De Bona F, Hartmann L, Bohlen A, Krüger N, Sonnenburg S, Rätsch G.

Genome Res. 2009 Nov;19(11):2133-43. doi: 10.1101/gr.090597.108. Epub 2009 Jun 29.

6.

Evolutionary and biomedical implications of a Schistosoma japonicum complementary DNA resource.

Hu W, Yan Q, Shen DK, Liu F, Zhu ZD, Song HD, Xu XR, Wang ZJ, Rong YP, Zeng LC, Wu J, Zhang X, Wang JJ, Xu XN, Wang SY, Fu G, Zhang XL, Wang ZQ, Brindley PJ, McManus DP, Xue CL, Feng Z, Chen Z, Han ZG.

Nat Genet. 2003 Oct;35(2):139-47. Epub 2003 Sep 14.

PMID:
12973349
7.

A specific PCR assay for the identification and differentiation of Schistosoma japonicum geographical isolates in mainland China based on analysis of mitochondrial genome sequences.

Zhao GH, Li J, Song HQ, Li XY, Chen F, Lin RQ, Yuan ZG, Weng YB, Hu M, Zou FC, Zhu XQ.

Infect Genet Evol. 2012 Jul;12(5):1027-36. doi: 10.1016/j.meegid.2012.02.020. Epub 2012 Mar 13.

PMID:
22446475
8.

Comparative genomics in C. elegans, C. briggsae, and other Caenorhabditis species.

Coghlan A, Stajich JE, Harris TW.

Methods Mol Biol. 2006;351:13-29. Review.

PMID:
16988423
9.

nGASP--the nematode genome annotation assessment project.

Coghlan A, Fiedler TJ, McKay SJ, Flicek P, Harris TW, Blasiar D; nGASP Consortium, Stein LD.

BMC Bioinformatics. 2008 Dec 19;9:549. doi: 10.1186/1471-2105-9-549.

10.

Closing in on the C. elegans ORFeome by cloning TWINSCAN predictions.

Wei C, Lamesch P, Arumugam M, Rosenberg J, Hu P, Vidal M, Brent MR.

Genome Res. 2005 Apr;15(4):577-82.

11.

Gulliver, a long terminal repeat retrotransposon from the genome of the oriental blood fluke Schistosoma japonicum.

Laha T, Loukas A, Verity CK, McManus DP, Brindley PJ.

Gene. 2001 Feb 7;264(1):59-68.

PMID:
11245979
12.

[Acquisition and analysis of 149 ESTs and 18 novel genes of Schistosoma japonicum].

Zeng Q, Xiao JH, Wan ZG, Zhang YK, Liu CA, Yang QL.

Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi. 2005 Apr 30;23(2):86-9. Chinese.

PMID:
16042172
13.

Mitochondrial gene content, arrangement and composition compared in African and Asian schistosomes.

Le TH, Humair PF, Blair D, Agatsuma T, Littlewood DT, McManus DP.

Mol Biochem Parasitol. 2001 Sep 28;117(1):61-71.

PMID:
11551632
14.

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.

Remm M, Storm CE, Sonnhammer EL.

J Mol Biol. 2001 Dec 14;314(5):1041-52.

PMID:
11743721
15.

Cloning and characterization of the Schistosoma japonicum aspartic proteinase involved in hemoglobin degradation.

Becker MM, Harrop SA, Dalton JP, Kalinna BH, McManus DP, Brindley PJ.

J Biol Chem. 1995 Oct 13;270(41):24496-501. Erratum in: J Biol Chem 1997 Jul 4;272(27):17246.

16.

Making the most of mitochondrial genomes--markers for phylogeny, molecular ecology and barcodes in Schistosoma (Platyhelminthes: Digenea).

Zarowiecki MZ, Huyse T, Littlewood DT.

Int J Parasitol. 2007 Oct;37(12):1401-18. Epub 2007 May 10.

PMID:
17570370
17.

Genomics in C. elegans: so many genes, such a little worm.

Hillier LW, Coulson A, Murray JI, Bao Z, Sulston JE, Waterston RH.

Genome Res. 2005 Dec;15(12):1651-60. Review.

18.

Full-genome RNAi profiling of early embryogenesis in Caenorhabditis elegans.

Sönnichsen B, Koski LB, Walsh A, Marschall P, Neumann B, Brehm M, Alleaume AM, Artelt J, Bettencourt P, Cassin E, Hewitson M, Holz C, Khan M, Lazik S, Martin C, Nitzsche B, Ruer M, Stamford J, Winzi M, Heinkel R, Röder M, Finell J, Häntsch H, Jones SJ, Jones M, Piano F, Gunsalus KC, Oegema K, Gönczy P, Coulson A, Hyman AA, Echeverri CJ.

Nature. 2005 Mar 24;434(7032):462-9.

PMID:
15791247
19.

Bursts of transposition from non-long terminal repeat retrotransposon families of the RTE clade in Schistosoma mansoni.

Venancio TM, Wilson RA, Verjovski-Almeida S, DeMarco R.

Int J Parasitol. 2010 May;40(6):743-9. doi: 10.1016/j.ijpara.2009.11.013. Epub 2009 Dec 16.

PMID:
20018191
20.

HaMStR: profile hidden markov model based search for orthologs in ESTs.

Ebersberger I, Strauss S, von Haeseler A.

BMC Evol Biol. 2009 Jul 8;9:157. doi: 10.1186/1471-2148-9-157.

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