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Items: 1 to 20 of 114

1.

Noisy signaling through promoter logic gates.

Gerstung M, Timmer J, Fleck C.

Phys Rev E Stat Nonlin Soft Matter Phys. 2009 Jan;79(1 Pt 1):011923. Epub 2009 Jan 29.

PMID:
19257085
2.

Genetic programs constructed from layered logic gates in single cells.

Moon TS, Lou C, Tamsir A, Stanton BC, Voigt CA.

Nature. 2012 Nov 8;491(7423):249-53. doi: 10.1038/nature11516. Epub 2012 Oct 7.

3.

Develop reusable and combinable designs for transcriptional logic gates.

Zhan J, Ding B, Ma R, Ma X, Su X, Zhao Y, Liu Z, Wu J, Liu H.

Mol Syst Biol. 2010 Jul 13;6:388. doi: 10.1038/msb.2010.42.

4.

Plasticity of the cis-regulatory input function of a gene.

Mayo AE, Setty Y, Shavit S, Zaslaver A, Alon U.

PLoS Biol. 2006 Apr;4(4):e45. Epub 2006 Mar 28.

5.

Control of logic gates by dichotomous noise in energetic and entropic systems.

Das M, Ray DS.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Sep;88(3):032122. Epub 2013 Sep 13.

PMID:
24125228
6.

Genetic flexibility of regulatory networks.

Hunziker A, Tuboly C, Horváth P, Krishna S, Semsey S.

Proc Natl Acad Sci U S A. 2010 Jul 20;107(29):12998-3003. doi: 10.1073/pnas.0915003107. Epub 2010 Jul 6.

7.

Noise-aided computation within a synthetic gene network through morphable and robust logic gates.

Dari A, Kia B, Wang X, Bulsara AR, Ditto W.

Phys Rev E Stat Nonlin Soft Matter Phys. 2011 Apr;83(4 Pt 1):041909. Epub 2011 Apr 11.

PMID:
21599203
8.

Broadening the signal specificity of prokaryotic promoters by modifying cis-regulatory elements associated with a single transcription factor.

Silva-Rocha R, de Lorenzo V.

Mol Biosyst. 2012 Jul 6;8(7):1950-7. doi: 10.1039/c2mb25030f. Epub 2012 May 15.

PMID:
22588473
9.

From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters.

Pérez AG, Angarica VE, Collado-Vides J, Vasconcelos AT.

BMC Mol Biol. 2009 Sep 22;10:92. doi: 10.1186/1471-2199-10-92.

10.

Transcriptional regulation by competing transcription factor modules.

Hermsen R, Tans S, ten Wolde PR.

PLoS Comput Biol. 2006 Dec 1;2(12):e164. Epub 2006 Oct 23.

11.

Rapid engineering of versatile molecular logic gates using heterologous genetic transcriptional modules.

Wang B, Buck M.

Chem Commun (Camb). 2014 Oct 11;50(79):11642-4. doi: 10.1039/c4cc05264a.

12.

Connectable DNA logic gates: OR and XOR logics.

Gerasimova YV, Kolpashchikov DM.

Chem Asian J. 2012 Mar 5;7(3):534-40. doi: 10.1002/asia.201100664. Epub 2011 Dec 23.

PMID:
22213731
13.

Mutations in transcriptional regulators allow selective engineering of signal integration logic.

Semsey S.

MBio. 2014 Jun 24;5(3):e01171-14. doi: 10.1128/mBio.01171-14.

14.

Predicting the asymmetric response of a genetic switch to noise.

Ochab-Marcinek A.

J Theor Biol. 2008 Sep 7;254(1):37-44. doi: 10.1016/j.jtbi.2008.04.032. Epub 2008 May 4.

PMID:
18554612
15.

Parallel logic gates in synthetic gene networks induced by non-Gaussian noise.

Xu Y, Jin X, Zhang H.

Phys Rev E Stat Nonlin Soft Matter Phys. 2013 Nov;88(5):052721. Epub 2013 Nov 26.

PMID:
24329310
16.

Amplifying genetic logic gates.

Bonnet J, Yin P, Ortiz ME, Subsoontorn P, Endy D.

Science. 2013 May 3;340(6132):599-603. doi: 10.1126/science.1232758. Epub 2013 Mar 28.

17.

Majority and minority gates realized in enzyme-biocatalyzed systems integrated with logic networks and interfaced with bioelectronic systems.

Mailloux S, Guz N, Zakharchenko A, Minko S, Katz E.

J Phys Chem B. 2014 Jun 19;118(24):6775-84. doi: 10.1021/jp504057u. Epub 2014 Jun 10.

PMID:
24873717
18.

Complete all-optical processing polarization-based binary logic gates and optical processors.

Zaghloul YA, Zaghloul AR.

Opt Express. 2006 Oct 16;14(21):9879-95.

PMID:
19529381
19.

Transcriptional activation by FNR and CRP: reciprocity of binding-site recognition.

Sawers G, Kaiser M, Sirko A, Freundlich M.

Mol Microbiol. 1997 Feb;23(4):835-45.

20.

Signal propagation in nonlinear stochastic gene regulatory networks.

Achimescu S, Lipan O.

Syst Biol (Stevenage). 2006 May;153(3):120-34.

PMID:
16984086

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