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Items: 1 to 20 of 92

1.

Outcome of a workshop on applications of protein models in biomedical research.

Schwede T, Sali A, Honig B, Levitt M, Berman HM, Jones D, Brenner SE, Burley SK, Das R, Dokholyan NV, Dunbrack RL Jr, Fidelis K, Fiser A, Godzik A, Huang YJ, Humblet C, Jacobson MP, Joachimiak A, Krystek SR Jr, Kortemme T, Kryshtafovych A, Montelione GT, Moult J, Murray D, Sanchez R, Sosnick TR, Standley DM, Stouch T, Vajda S, Vasquez M, Westbrook JD, Wilson IA.

Structure. 2009 Feb 13;17(2):151-9. doi: 10.1016/j.str.2008.12.014.

2.

Applications of click chemistry in radiopharmaceutical development.

Walsh JC, Kolb HC.

Chimia (Aarau). 2010;64(1-2):29-33.

PMID:
21137680
3.

Protein design with fragment databases.

Verschueren E, Vanhee P, van der Sloot AM, Serrano L, Rousseau F, Schymkowitz J.

Curr Opin Struct Biol. 2011 Aug;21(4):452-9. doi: 10.1016/j.sbi.2011.05.002. Epub 2011 Jun 16. Review.

PMID:
21684149
4.

Incorporating intermolecular distance into protein-protein docking.

Lei H, Duan Y.

Protein Eng Des Sel. 2004 Dec;17(12):837-45. Epub 2005 Feb 15.

PMID:
15713781
5.
6.

Mapping drug-target interaction networks.

Tian L, Zhang S.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:2336-9. doi: 10.1109/IEMBS.2009.5335053.

PMID:
19965180
7.

Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop.

Sali A, Berman HM, Schwede T, Trewhella J, Kleywegt G, Burley SK, Markley J, Nakamura H, Adams P, Bonvin AM, Chiu W, Peraro MD, Di Maio F, Ferrin TE, Grünewald K, Gutmanas A, Henderson R, Hummer G, Iwasaki K, Johnson G, Lawson CL, Meiler J, Marti-Renom MA, Montelione GT, Nilges M, Nussinov R, Patwardhan A, Rappsilber J, Read RJ, Saibil H, Schröder GF, Schwieters CD, Seidel CA, Svergun D, Topf M, Ulrich EL, Velankar S, Westbrook JD.

Structure. 2015 Jul 7;23(7):1156-67. doi: 10.1016/j.str.2015.05.013. Epub 2015 Jun 18.

8.

Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop.

Adams PD, Aertgeerts K, Bauer C, Bell JA, Berman HM, Bhat TN, Blaney JM, Bolton E, Bricogne G, Brown D, Burley SK, Case DA, Clark KL, Darden T, Emsley P, Feher VA, Feng Z, Groom CR, Harris SF, Hendle J, Holder T, Joachimiak A, Kleywegt GJ, Krojer T, Marcotrigiano J, Mark AE, Markley JL, Miller M, Minor W, Montelione GT, Murshudov G, Nakagawa A, Nakamura H, Nicholls A, Nicklaus M, Nolte RT, Padyana AK, Peishoff CE, Pieniazek S, Read RJ, Shao C, Sheriff S, Smart O, Soisson S, Spurlino J, Stouch T, Svobodova R, Tempel W, Terwilliger TC, Tronrud D, Velankar S, Ward SC, Warren GL, Westbrook JD, Williams P, Yang H, Young J.

Structure. 2016 Apr 5;24(4):502-508. doi: 10.1016/j.str.2016.02.017.

9.

LigPlot+: multiple ligand-protein interaction diagrams for drug discovery.

Laskowski RA, Swindells MB.

J Chem Inf Model. 2011 Oct 24;51(10):2778-86. doi: 10.1021/ci200227u. Epub 2011 Oct 5.

PMID:
21919503
10.

Protein-protein interactions: network analysis and applications in drug discovery.

Bultinck J, Lievens S, Tavernier J.

Curr Pharm Des. 2012;18(30):4619-29. Review.

PMID:
22650261
11.

Modeling peptide-protein interactions.

London N, Raveh B, Schueler-Furman O.

Methods Mol Biol. 2012;857:375-98. doi: 10.1007/978-1-61779-588-6_17.

PMID:
22323231
12.

Databases of protein-protein interactions and their use in drug discovery.

Fuentes G, Oyarzabal J, Rojas AM.

Curr Opin Drug Discov Devel. 2009 May;12(3):358-66. Review.

PMID:
19396737
13.

Principles for designing ordered protein assemblies.

Lai YT, King NP, Yeates TO.

Trends Cell Biol. 2012 Dec;22(12):653-61. doi: 10.1016/j.tcb.2012.08.004. Epub 2012 Sep 10. Review.

PMID:
22975357
14.

Strategies for the discovery and engineering of enzymes for biocatalysis.

Davids T, Schmidt M, Böttcher D, Bornscheuer UT.

Curr Opin Chem Biol. 2013 Apr;17(2):215-20. doi: 10.1016/j.cbpa.2013.02.022. Epub 2013 Mar 21. Review.

PMID:
23523243
15.

Computational resources for protein modelling and drug discovery applications.

Dhaliwal B, Chen YW.

Infect Disord Drug Targets. 2009 Nov;9(5):557-62. Review.

PMID:
19594423
16.

Protein modules and protein-protein interaction. Introduction.

Janin J, Wodak SJ.

Adv Protein Chem. 2002;61:1-8. Review. No abstract available.

PMID:
12461819
17.

A data mining method to facilitate SAR transfer.

Wassermann AM, Bajorath J.

J Chem Inf Model. 2011 Aug 22;51(8):1857-66. doi: 10.1021/ci200254k. Epub 2011 Aug 8.

PMID:
21774471
18.

BIOVERSE: enhancements to the framework for structural, functional and contextual modeling of proteins and proteomes.

McDermott J, Guerquin M, Frazier Z, Chang AN, Samudrala R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W324-5.

19.

Energy estimation in protein design.

Mendes J, Guerois R, Serrano L.

Curr Opin Struct Biol. 2002 Aug;12(4):441-6. Review.

PMID:
12163065
20.

Patents of bio-active compounds based on computer-aided drug discovery techniques.

Prado-Prado F, Garcia-Mera X, Rodriguez-Borges JE, Concu R, Perez-Montoto LG, Gonzalez-Diaz H, Duardo-Sanchez A.

Front Biosci (Elite Ed). 2013 Jan 1;5:399-407. Review.

PMID:
23276997

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