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Items: 1 to 20 of 285

1.

Nested uncertainties in biochemical models.

Schaber J, Liebermeister W, Klipp E.

IET Syst Biol. 2009 Jan;3(1):1-9. doi: 10.1049/iet-syb:20070042.

PMID:
19154080
2.

BioBayes: a software package for Bayesian inference in systems biology.

Vyshemirsky V, Girolami M.

Bioinformatics. 2008 Sep 1;24(17):1933-4. doi: 10.1093/bioinformatics/btn338.

PMID:
18632751
3.

Modelling and analysis of the sugar cataract development process using stochastic hybrid systems.

Riley D, Koutsoukos X, Riley K.

IET Syst Biol. 2009 May;3(3):137-54. doi: 10.1049/iet-syb.2008.0101.

PMID:
19449975
4.

Bridging from molecular simulation to biochemical networks.

Stein M, Gabdoulline RR, Wade RC.

Curr Opin Struct Biol. 2007 Apr;17(2):166-72. Review.

PMID:
17395455
5.

Optimal experimental design with the sigma point method.

Schenkendorf R, Kremling A, Mangold M.

IET Syst Biol. 2009 Jan;3(1):10-23. doi: 10.1049/iet-syb:20080094.

PMID:
19154081
6.

A general model of reaction kinetics in biological systems.

Haag JE, Vande Wouwer A, Remy M.

Bioprocess Biosyst Eng. 2005 Aug;27(5):303-9.

PMID:
15986214
7.

Resources, standards and tools for systems biology.

Wierling C, Herwig R, Lehrach H.

Brief Funct Genomic Proteomic. 2007 Sep;6(3):240-51.

PMID:
17942476
8.

Parameter identification, experimental design and model falsification for biological network models using semidefinite programming.

Hasenauer J, Waldherr S, Wagner K, Allgöwer F.

IET Syst Biol. 2010 Mar;4(2):119-30. doi: 10.1049/iet-syb.2009.0030.

PMID:
20232992
9.

SBMLsqueezer: a CellDesigner plug-in to generate kinetic rate equations for biochemical networks.

Dräger A, Hassis N, Supper J, Schröder A, Zell A.

BMC Syst Biol. 2008 Apr 30;2:39. doi: 10.1186/1752-0509-2-39.

10.

The virtual cell--a candidate co-ordinator for 'middle-out' modelling of biological systems.

Walker DC, Southgate J.

Brief Bioinform. 2009 Jul;10(4):450-61. doi: 10.1093/bib/bbp010. Review.

PMID:
19293250
11.

Gene regulatory network inference: data integration in dynamic models-a review.

Hecker M, Lambeck S, Toepfer S, van Someren E, Guthke R.

Biosystems. 2009 Apr;96(1):86-103. doi: 10.1016/j.biosystems.2008.12.004. Review.

PMID:
19150482
12.

Biological network design strategies: discovery through dynamic optimization.

Adiwijaya BS, Barton PI, Tidor B.

Mol Biosyst. 2006 Dec;2(12):650-9.

PMID:
17216046
13.

Variability and uncertainty of biokinetic model parameters: the discrete empirical Bayes approximation.

Miller G.

Radiat Prot Dosimetry. 2008;131(3):394-8. doi: 10.1093/rpd/ncn180.

PMID:
18689801
14.

Computing chemical organizations in biological networks.

Centler F, Kaleta C, di Fenizio PS, Dittrich P.

Bioinformatics. 2008 Jul 15;24(14):1611-8. doi: 10.1093/bioinformatics/btn228.

PMID:
18480100
15.

Modelling the dynamics of biosystems.

Priami C, Quaglia P.

Brief Bioinform. 2004 Sep;5(3):259-69. Review.

PMID:
15383212
16.

Using chemical reaction network theory to discard a kinetic mechanism hypothesis.

Conradi C, Saez-Rodriguez J, Gilles ED, Raisch J.

Syst Biol (Stevenage). 2005 Dec;152(4):243-8.

PMID:
16986266
17.

Calibration of dynamic models of biological systems with KInfer.

Lecca P, Palmisano A, Ihekwaba A, Priami C.

Eur Biophys J. 2010 May;39(6):1019-39. doi: 10.1007/s00249-009-0520-3.

PMID:
19669750
19.

Model discrimination using data collaboration.

Feeley R, Frenklach M, Onsum M, Russi T, Arkin A, Packard A.

J Phys Chem A. 2006 Jun 1;110(21):6803-13.

PMID:
16722696
20.

Modelling codependence in biological systems.

Mandel JJ, Palfreyman NM, Dubitzky W.

IET Syst Biol. 2007 Jan;1(1):18-32.

PMID:
17370426
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