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Items: 1 to 20 of 110

1.

Germ warfare in a microbial mat community: CRISPRs provide insights into the co-evolution of host and viral genomes.

Heidelberg JF, Nelson WC, Schoenfeld T, Bhaya D.

PLoS One. 2009;4(1):e4169. doi: 10.1371/journal.pone.0004169. Epub 2009 Jan 9.

2.

Diverse CRISPRs evolving in human microbiomes.

Rho M, Wu YW, Tang H, Doak TG, Ye Y.

PLoS Genet. 2012;8(6):e1002441. doi: 10.1371/journal.pgen.1002441. Epub 2012 Jun 13.

3.

Major bacterial lineages are essentially devoid of CRISPR-Cas viral defence systems.

Burstein D, Sun CL, Brown CT, Sharon I, Anantharaman K, Probst AJ, Thomas BC, Banfield JF.

Nat Commun. 2016 Feb 3;7:10613. doi: 10.1038/ncomms10613.

4.

Virus population dynamics and acquired virus resistance in natural microbial communities.

Andersson AF, Banfield JF.

Science. 2008 May 23;320(5879):1047-50. doi: 10.1126/science.1157358.

5.

Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses.

Bhaya D, Grossman AR, Steunou AS, Khuri N, Cohan FM, Hamamura N, Melendrez MC, Bateson MM, Ward DM, Heidelberg JF.

ISME J. 2007 Dec;1(8):703-13. Epub 2007 Oct 25.

PMID:
18059494
6.
7.

[Comparative analysis of clustered regularly interspaced short palindromic repeats (CRISPRs) loci in the genomes of halophilic archaea].

Zhang F, Zhang B, Xiang H, Hu S.

Wei Sheng Wu Xue Bao. 2009 Nov;49(11):1445-53. Chinese.

PMID:
20112671
8.

Diversity, activity, and evolution of CRISPR loci in Streptococcus thermophilus.

Horvath P, Romero DA, Coûté-Monvoisin AC, Richards M, Deveau H, Moineau S, Boyaval P, Fremaux C, Barrangou R.

J Bacteriol. 2008 Feb;190(4):1401-12. Epub 2007 Dec 7.

9.

Ecological and genetic interactions between cyanobacteria and viruses in a low-oxygen mat community inferred through metagenomics and metatranscriptomics.

Voorhies AA, Eisenlord SD, Marcus DN, Duhaime MB, Biddanda BA, Cavalcoli JD, Dick GJ.

Environ Microbiol. 2016 Feb;18(2):358-71. doi: 10.1111/1462-2920.12756. Epub 2015 Mar 4.

PMID:
25627339
10.

Comparative genomic analysis of phylogenetically closely related Hydrogenobaculum sp. isolates from Yellowstone National Park.

Romano C, D'Imperio S, Woyke T, Mavromatis K, Lasken R, Shock EL, McDermott TR.

Appl Environ Microbiol. 2013 May;79(9):2932-43. doi: 10.1128/AEM.03591-12. Epub 2013 Feb 22.

11.

CRISPR/Cas, the immune system of bacteria and archaea.

Horvath P, Barrangou R.

Science. 2010 Jan 8;327(5962):167-70. doi: 10.1126/science.1179555. Review.

PMID:
20056882
12.

Snapshot of haloarchaeal tailed virus genomes.

Senčilo A, Jacobs-Sera D, Russell DA, Ko CC, Bowman CA, Atanasova NS, Österlund E, Oksanen HM, Bamford DH, Hatfull GF, Roine E, Hendrix RW.

RNA Biol. 2013 May;10(5):803-16. doi: 10.4161/rna.24045. Epub 2013 Mar 7.

13.

Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems.

Makarova KS, Aravind L, Wolf YI, Koonin EV.

Biol Direct. 2011 Jul 14;6:38. doi: 10.1186/1745-6150-6-38.

14.

A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes.

Haft DH, Selengut J, Mongodin EF, Nelson KE.

PLoS Comput Biol. 2005 Nov;1(6):e60. Epub 2005 Nov 11.

15.

Comparative analysis of CRISPR cassettes from the human gut metagenomic contigs.

Gogleva AA, Gelfand MS, Artamonova II.

BMC Genomics. 2014 Mar 17;15:202. doi: 10.1186/1471-2164-15-202.

16.

Acidianus Tailed Spindle Virus: a New Archaeal Large Tailed Spindle Virus Discovered by Culture-Independent Methods.

Hochstein RA, Amenabar MJ, Munson-McGee JH, Boyd ES, Young MJ.

J Virol. 2016 Jan 13;90(7):3458-68. doi: 10.1128/JVI.03098-15.

17.

Metagenomic analyses of novel viruses and plasmids from a cultured environmental sample of hyperthermophilic neutrophiles.

Garrett RA, Prangishvili D, Shah SA, Reuter M, Stetter KO, Peng X.

Environ Microbiol. 2010 Nov;12(11):2918-30. doi: 10.1111/j.1462-2920.2010.02266.x.

PMID:
20545752
18.

Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures.

Pride DT, Schoenfeld T.

BMC Genomics. 2008 Sep 17;9:420. doi: 10.1186/1471-2164-9-420.

19.

Linking environmental prokaryotic viruses and their host through CRISPRs.

Sanguino L, Franqueville L, Vogel TM, Larose C.

FEMS Microbiol Ecol. 2015 May;91(5). pii: fiv046. doi: 10.1093/femsec/fiv046. Epub 2015 Apr 22.

PMID:
25908869
20.

CRISPR loci reveal networks of gene exchange in archaea.

Brodt A, Lurie-Weinberger MN, Gophna U.

Biol Direct. 2011 Dec 21;6(1):65. doi: 10.1186/1745-6150-6-65.

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