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Items: 1 to 20 of 80

1.

FastMap: fast eQTL mapping in homozygous populations.

Gatti DM, Shabalin AA, Lam TC, Wright FA, Rusyn I, Nobel AB.

Bioinformatics. 2009 Feb 15;25(4):482-9. doi: 10.1093/bioinformatics/btn648. Epub 2008 Dec 17.

2.

Rapid and robust resampling-based multiple-testing correction with application in a genome-wide expression quantitative trait loci study.

Zhang X, Huang S, Sun W, Wang W.

Genetics. 2012 Apr;190(4):1511-20. doi: 10.1534/genetics.111.137737. Epub 2012 Jan 31.

3.

Methodological aspects of the genetic dissection of gene expression.

Carlborg O, De Koning DJ, Manly KF, Chesler E, Williams RW, Haley CS.

Bioinformatics. 2005 May 15;21(10):2383-93.

PMID:
15613385
4.

Matrix eQTL: ultra fast eQTL analysis via large matrix operations.

Shabalin AA.

Bioinformatics. 2012 May 15;28(10):1353-8. doi: 10.1093/bioinformatics/bts163. Epub 2012 Apr 6.

5.

Powerful identification of cis-regulatory SNPs in human primary monocytes using allele-specific gene expression.

Almlöf JC, Lundmark P, Lundmark A, Ge B, Maouche S, Göring HH, Liljedahl U, Enström C, Brocheton J, Proust C, Godefroy T, Sambrook JG, Jolley J, Crisp-Hihn A, Foad N, Lloyd-Jones H, Stephens J, Gwilliam R, Rice CM, Hengstenberg C, Samani NJ, Erdmann J, Schunkert H, Pastinen T, Deloukas P, Goodall AH, Ouwehand WH, Cambien F, Syvänen AC.

PLoS One. 2012;7(12):e52260. doi: 10.1371/journal.pone.0052260. Epub 2012 Dec 26.

6.

JEPEG: a summary statistics based tool for gene-level joint testing of functional variants.

Lee D, Williamson VS, Bigdeli TB, Riley BP, Fanous AH, Vladimirov VI, Bacanu SA.

Bioinformatics. 2015 Apr 15;31(8):1176-82. doi: 10.1093/bioinformatics/btu816. Epub 2014 Dec 12.

7.

Applying genome-wide gene-based expression quantitative trait locus mapping to study population ancestry and pharmacogenetics.

Yang HC, Lin CW, Chen CW, Chen JJ.

BMC Genomics. 2014 Apr 29;15:319. doi: 10.1186/1471-2164-15-319.

8.

Mapping quantitative trait loci for expression abundance.

Jia Z, Xu S.

Genetics. 2007 May;176(1):611-23. Epub 2007 Mar 4.

9.

Systems genetics, bioinformatics and eQTL mapping.

Li H, Deng H.

Genetica. 2010 Oct;138(9-10):915-24. doi: 10.1007/s10709-010-9480-x. Epub 2010 Sep 3. Review.

PMID:
20811929
10.

Multiple interval mapping for gene expression QTL analysis.

Zou W, Zeng ZB.

Genetica. 2009 Nov;137(2):125-34. doi: 10.1007/s10709-009-9365-z. Epub 2009 May 9.

PMID:
19430916
11.

Association and expression quantitative trait loci (eQTL) analysis of porcine AMBP, GC and PPP1R3B genes with meat quality traits.

Cinar MU, Kayan A, Uddin MJ, Jonas E, Tesfaye D, Phatsara C, Ponsuksili S, Wimmers K, Tholen E, Looft C, Jüngst H, Schellander K.

Mol Biol Rep. 2012 Apr;39(4):4809-21. doi: 10.1007/s11033-011-1274-4. Epub 2011 Sep 27.

PMID:
21947951
12.

Proximity model for expression quantitative trait loci (eQTL) detection.

Gelfond JA, Ibrahim JG, Zou F.

Biometrics. 2007 Dec;63(4):1108-16. Epub 2007 Apr 9.

PMID:
17425636
13.

RTeQTL: Real-Time Online Engine for Expression Quantitative Trait Loci Analyses.

Ma B, Huang J, Liang L.

Database (Oxford). 2014 Jul 18;2014. pii: bau066. doi: 10.1093/database/bau066. Print 2014.

14.

Expression quantitative trait loci analysis identifies associations between genotype and gene expression in human intestine.

Kabakchiev B, Silverberg MS.

Gastroenterology. 2013 Jun;144(7):1488-96, 1496.e1-3. doi: 10.1053/j.gastro.2013.03.001. Epub 2013 Mar 6.

15.

eQTL Viewer: visualizing how sequence variation affects genome-wide transcription.

Zou W, Aylor DL, Zeng ZB.

BMC Bioinformatics. 2007 Jan 9;8:7.

16.

A model selection approach for expression quantitative trait loci (eQTL) mapping.

Wang P, Dawson JA, Keller MP, Yandell BS, Thornberry NA, Zhang BB, Wang IM, Schadt EE, Attie AD, Kendziorski C.

Genetics. 2011 Feb;187(2):611-21. doi: 10.1534/genetics.110.122796. Epub 2010 Nov 29.

17.

R/qtl: QTL mapping in experimental crosses.

Broman KW, Wu H, Sen S, Churchill GA.

Bioinformatics. 2003 May 1;19(7):889-90.

PMID:
12724300
18.

Expression quantitative trait loci mapping with multivariate sparse partial least squares regression.

Chun H, Keles S.

Genetics. 2009 May;182(1):79-90. doi: 10.1534/genetics.109.100362. Epub 2009 Mar 6.

19.

A statistical framework for eQTL mapping using RNA-seq data.

Sun W.

Biometrics. 2012 Mar;68(1):1-11. doi: 10.1111/j.1541-0420.2011.01654.x. Epub 2011 Aug 12.

20.

Integrative analysis of low- and high-resolution eQTL.

Loguercio S, Overall RW, Michaelson JJ, Wiltshire T, Pletcher MT, Miller BH, Walker JR, Kempermann G, Su AI, Beyer A.

PLoS One. 2010 Nov 10;5(11):e13920. doi: 10.1371/journal.pone.0013920.

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