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Items: 1 to 20 of 73

1.

Gene expression levels are a target of recent natural selection in the human genome.

Kudaravalli S, Veyrieras JB, Stranger BE, Dermitzakis ET, Pritchard JK.

Mol Biol Evol. 2009 Mar;26(3):649-58. doi: 10.1093/molbev/msn289. Epub 2008 Dec 17.

2.

A map of recent positive selection in the human genome.

Voight BF, Kudaravalli S, Wen X, Pritchard JK.

PLoS Biol. 2006 Mar;4(3):e72. Epub 2006 Mar 7. Erratum in: PLoS Biol. 2007 Jun;5(6):e147. PLoS Biol. 2006 Apr;4(4):e154.

4.

HapMap-based study of human soluble glutathione S-transferase enzymes: the role of natural selection in shaping the single nucleotide polymorphism diversity of xenobiotic-metabolizing genes.

Polimanti R, Piacentini S, Fuciarelli M.

Pharmacogenet Genomics. 2011 Oct;21(10):665-72. doi: 10.1097/FPC.0b013e328349da4d.

PMID:
21799460
5.

A new approach for using genome scans to detect recent positive selection in the human genome.

Tang K, Thornton KR, Stoneking M.

PLoS Biol. 2007 Jul;5(7):e171. Epub 2007 Jun 19.

6.

A whole genome long-range haplotype (WGLRH) test for detecting imprints of positive selection in human populations.

Zhang C, Bailey DK, Awad T, Liu G, Xing G, Cao M, Valmeekam V, Retief J, Matsuzaki H, Taub M, Seielstad M, Kennedy GC.

Bioinformatics. 2006 Sep 1;22(17):2122-8. Epub 2006 Jul 15.

PMID:
16845142
7.
8.

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.

Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK.

Genome Biol. 2011;12(1):R10. doi: 10.1186/gb-2011-12-1-r10. Epub 2011 Jan 20. Erratum in: Genome Biol. 2011;12(6):405.

9.

Relative impact of nucleotide and copy number variation on gene expression phenotypes.

Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N, Redon R, Bird CP, de Grassi A, Lee C, Tyler-Smith C, Carter N, Scherer SW, Tavaré S, Deloukas P, Hurles ME, Dermitzakis ET.

Science. 2007 Feb 9;315(5813):848-53.

10.

Stronger signal of recent selection for lactase persistence in Maasai than in Europeans.

Schlebusch CM, Sjödin P, Skoglund P, Jakobsson M.

Eur J Hum Genet. 2013 May;21(5):550-3. doi: 10.1038/ejhg.2012.199. Epub 2012 Sep 5.

11.

Genomic scans for selective sweeps using SNP data.

Nielsen R, Williamson S, Kim Y, Hubisz MJ, Clark AG, Bustamante C.

Genome Res. 2005 Nov;15(11):1566-75.

12.

SNP@Evolution: a hierarchical database of positive selection on the human genome.

Cheng F, Chen W, Richards E, Deng L, Zeng C.

BMC Evol Biol. 2009 Sep 5;9:221. doi: 10.1186/1471-2148-9-221.

13.

Population differentiation as an indicator of recent positive selection in humans: an empirical evaluation.

Xue Y, Zhang X, Huang N, Daly A, Gillson CJ, Macarthur DG, Yngvadottir B, Nica AC, Woodwark C, Chen Y, Conrad DF, Ayub Q, Mehdi SQ, Li P, Tyler-Smith C.

Genetics. 2009 Nov;183(3):1065-77. doi: 10.1534/genetics.109.107722. Epub 2009 Sep 7.

14.

Genome-wide detection and characterization of positive selection in human populations.

Sabeti PC, Varilly P, Fry B, Lohmueller J, Hostetter E, Cotsapas C, Xie X, Byrne EH, McCarroll SA, Gaudet R, Schaffner SF, Lander ES; International HapMap Consortium., Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, Yang H, Zeng C, Gao Y, Hu H, Hu W, Li C, Lin W, Liu S, Pan H, Tang X, Wang J, Wang W, Yu J, Zhang B, Zhang Q, Zhao H, Zhao H, Zhou J, Gabriel SB, Barry R, Blumenstiel B, Camargo A, Defelice M, Faggart M, Goyette M, Gupta S, Moore J, Nguyen H, Onofrio RC, Parkin M, Roy J, Stahl E, Winchester E, Ziaugra L, Altshuler D, Shen Y, Yao Z, Huang W, Chu X, He Y, Jin L, Liu Y, Shen Y, Sun W, Wang H, Wang Y, Wang Y, Xiong X, Xu L, Waye MM, Tsui SK, Xue H, Wong JT, Galver LM, Fan JB, Gunderson K, Murray SS, Oliphant AR, Chee MS, Montpetit A, Chagnon F, Ferretti V, Leboeuf M, Olivier JF, Phillips MS, Roumy S, Sallée C, Verner A, Hudson TJ, Kwok PY, Cai D, Koboldt DC, Miller RD, Pawlikowska L, Taillon-Miller P, Xiao M, Tsui LC, Mak W, Song YQ, Tam PK, Nakamura Y, Kawaguchi T, Kitamoto T, Morizono T, Nagashima A, Ohnishi Y, Sekine A, Tanaka T, Tsunoda T, Deloukas P, Bird CP, Delgado M, Dermitzakis ET, Gwilliam R, Hunt S, Morrison J, Powell D, Stranger BE, Whittaker P, Bentley DR, Daly MJ, de Bakker PI, Barrett J, Chretien YR, Maller J, McCarroll S, Patterson N, Pe'er I, Price A, Purcell S, Richter DJ, Sabeti P, Saxena R, Schaffner SF, Sham PC, Varilly P, Altshuler D, Stein LD, Krishnan L, Smith AV, Tello-Ruiz MK, Thorisson GA, Chakravarti A, Chen PE, Cutler DJ, Kashuk CS, Lin S, Abecasis GR, Guan W, Li Y, Munro HM, Qin ZS, Thomas DJ, McVean G, Auton A, Bottolo L, Cardin N, Eyheramendy S, Freeman C, Marchini J, Myers S, Spencer C, Stephens M, Donnelly P, Cardon LR, Clarke G, Evans DM, Morris AP, Weir BS, Tsunoda T, Johnson TA, Mullikin JC, Sherry ST, Feolo M, Skol A, Zhang H, Zeng C, Zhao H, Matsuda I, Fukushima Y, Macer DR, Suda E, Rotimi CN, Adebamowo CA, Ajayi I, Aniagwu T, Marshall PA, Nkwodimmah C, Royal CD, Leppert MF, Dixon M, Peiffer A, Qiu R, Kent A, Kato K, Niikawa N, Adewole IF, Knoppers BM, Foster MW, Clayton EW, Watkin J, Gibbs RA, Belmont JW, Muzny D, Nazareth L, Sodergren E, Weinstock GM, Wheeler DA, Yakub I, Gabriel SB, Onofrio RC, Richter DJ, Ziaugra L, Birren BW, Daly MJ, Altshuler D, Wilson RK, Fulton LL, Rogers J, Burton J, Carter NP, Clee CM, Griffiths M, Jones MC, McLay K, Plumb RW, Ross MT, Sims SK, Willey DL, Chen Z, Han H, Kang L, Godbout M, Wallenburg JC, L'Archevêque P, Bellemare G, Saeki K, Wang H, An D, Fu H, Li Q, Wang Z, Wang R, Holden AL, Brooks LD, McEwen JE, Guyer MS, Wang VO, Peterson JL, Shi M, Spiegel J, Sung LM, Zacharia LF, Collins FS, Kennedy K, Jamieson R, Stewart J.

Nature. 2007 Oct 18;449(7164):913-8.

15.
16.

Genome-wide scan with nearly 700,000 SNPs in two Sardinian sub-populations suggests some regions as candidate targets for positive selection.

Piras IS, De Montis A, Calò CM, Marini M, Atzori M, Corrias L, Sazzini M, Boattini A, Vona G, Contu L.

Eur J Hum Genet. 2012 Nov;20(11):1155-61. doi: 10.1038/ejhg.2012.65. Epub 2012 Apr 25.

17.

A practical genome scan for population-specific strong selective sweeps that have reached fixation.

Kimura R, Fujimoto A, Tokunaga K, Ohashi J.

PLoS One. 2007 Mar 14;2(3):e286.

18.

Interrogating 11 fast-evolving genes for signatures of recent positive selection in worldwide human populations.

Moreno-Estrada A, Tang K, Sikora M, Marquès-Bonet T, Casals F, Navarro A, Calafell F, Bertranpetit J, Stoneking M, Bosch E.

Mol Biol Evol. 2009 Oct;26(10):2285-97. doi: 10.1093/molbev/msp134. Epub 2009 Jul 3.

PMID:
19578157
19.

An unusual haplotype structure on human chromosome 8p23 derived from the inversion polymorphism.

Deng L, Zhang Y, Kang J, Liu T, Zhao H, Gao Y, Li C, Pan H, Tang X, Wang D, Niu T, Yang H, Zeng C.

Hum Mutat. 2008 Oct;29(10):1209-16. doi: 10.1002/humu.20775.

PMID:
18473345
20.

Singapore Genome Variation Project: a haplotype map of three Southeast Asian populations.

Teo YY, Sim X, Ong RT, Tan AK, Chen J, Tantoso E, Small KS, Ku CS, Lee EJ, Seielstad M, Chia KS.

Genome Res. 2009 Nov;19(11):2154-62. doi: 10.1101/gr.095000.109. Epub 2009 Aug 21.

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