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Items: 1 to 20 of 137

1.

A novel approach for reliable microarray analysis of microdissected tumor cells from formalin-fixed and paraffin-embedded colorectal cancer resection specimens.

Lassmann S, Kreutz C, Schoepflin A, Hopt U, Timmer J, Werner M.

J Mol Med (Berl). 2009 Feb;87(2):211-24. doi: 10.1007/s00109-008-0419-y. Epub 2008 Dec 6.

PMID:
19066834
2.

Whole-genome gene expression profiling of formalin-fixed, paraffin-embedded tissue samples.

April C, Klotzle B, Royce T, Wickham-Garcia E, Boyaniwsky T, Izzo J, Cox D, Jones W, Rubio R, Holton K, Matulonis U, Quackenbush J, Fan JB.

PLoS One. 2009 Dec 3;4(12):e8162. doi: 10.1371/journal.pone.0008162.

3.

Preparation of archival formalin-fixed paraffin-embedded mouse liver samples for use with the Agilent gene expression microarray platform.

Jackson AF, Williams A, Moffat I, Phillips SL, Recio L, Waters MD, Lambert IB, Yauk CL.

J Pharmacol Toxicol Methods. 2013 Sep-Oct;68(2):260-8. doi: 10.1016/j.vascn.2013.02.008. Epub 2013 Mar 1.

PMID:
23458726
4.

Clinical relevance of DNA microarray analyses using archival formalin-fixed paraffin-embedded breast cancer specimens.

Sadi AM, Wang DY, Youngson BJ, Miller N, Boerner S, Done SJ, Leong WL.

BMC Cancer. 2011 Jun 16;11:253:1-13. doi: 10.1186/1471-2407-11-25.

5.

Preliminary comparison of quantity, quality, and microarray performance of RNA extracted from formalin-fixed, paraffin-embedded, and unfixed frozen tissue samples.

Scicchitano MS, Dalmas DA, Bertiaux MA, Anderson SM, Turner LR, Thomas RA, Mirable R, Boyce RW.

J Histochem Cytochem. 2006 Nov;54(11):1229-37. Epub 2006 Jul 24.

PMID:
16864893
6.

Mining the Archives: A Cross-Platform Analysis of Gene Expression Profiles in Archival Formalin-Fixed Paraffin-Embedded Tissues.

Webster AF, Zumbo P, Fostel J, Gandara J, Hester SD, Recio L, Williams A, Wood CE, Yauk CL, Mason CE.

Toxicol Sci. 2015 Dec;148(2):460-72. doi: 10.1093/toxsci/kfv195. Epub 2015 Sep 10.

7.

RNA expression analysis of formalin-fixed paraffin-embedded tumors.

Penland SK, Keku TO, Torrice C, He X, Krishnamurthy J, Hoadley KA, Woosley JT, Thomas NE, Perou CM, Sandler RS, Sharpless NE.

Lab Invest. 2007 Apr;87(4):383-91. Epub 2007 Feb 12.

8.

Gene-expression analysis of a colorectal cancer-specific discriminatory transcript set on formalin-fixed, paraffin-embedded (FFPE) tissue samples.

Kalmár A, Wichmann B, Galamb O, Spisák S, Tóth K, Leiszter K, Nielsen BS, Barták BK, Tulassay Z, Molnár B.

Diagn Pathol. 2015 Jul 25;10:126. doi: 10.1186/s13000-015-0363-4.

9.

Gene expression analysis of normal and colorectal cancer tissue samples from fresh frozen and matched formalin-fixed, paraffin-embedded (FFPE) specimens after manual and automated RNA isolation.

Kalmar A, Wichmann B, Galamb O, Spisák S, Tóth K, Leiszter K, Tulassay Z, Molnár B.

Methods. 2013 Jan;59(1):S16-9. doi: 10.1016/j.ymeth.2012.09.011. Epub 2012 Oct 2.

PMID:
23036325
10.

Quantitative expression profiling in formalin-fixed paraffin-embedded samples by affymetrix microarrays.

Abdueva D, Wing M, Schaub B, Triche T, Davicioni E.

J Mol Diagn. 2010 Jul;12(4):409-17. doi: 10.2353/jmoldx.2010.090155. Epub 2010 Jun 3.

11.

Comparison of ethanol versus formalin fixation on preservation of histology and RNA in laser capture microdissected brain tissues.

Su JM, Perlaky L, Li XN, Leung HC, Antalffy B, Armstrong D, Lau CC.

Brain Pathol. 2004 Apr;14(2):175-82.

PMID:
15193030
12.

Successful application of microarray technology to microdissected formalin-fixed, paraffin-embedded tissue.

Coudry RA, Meireles SI, Stoyanova R, Cooper HS, Carpino A, Wang X, Engstrom PF, Clapper ML.

J Mol Diagn. 2007 Feb;9(1):70-9.

13.

Quantitative gene expression analysis in microdissected archival formalin-fixed and paraffin-embedded tumor tissue.

Specht K, Richter T, Müller U, Walch A, Werner M, Höfler H.

Am J Pathol. 2001 Feb;158(2):419-29.

14.

MicroRNA expression profiling of specific cells in complex archival tissue stained by immunohistochemistry.

Schuster C, Budczies J, Faber C, Kirchner T, Hlubek F.

Lab Invest. 2011 Jan;91(1):157-65. doi: 10.1038/labinvest.2010.134. Epub 2010 Jul 26.

15.

Comparison of Nanostring nCounter® Data on FFPE Colon Cancer Samples and Affymetrix Microarray Data on Matched Frozen Tissues.

Chen X, Deane NG, Lewis KB, Li J, Zhu J, Washington MK, Beauchamp RD.

PLoS One. 2016 May 13;11(5):e0153784. doi: 10.1371/journal.pone.0153784. eCollection 2016.

16.

Comparison of gene expression profiling by reverse transcription quantitative PCR between fresh frozen and formalin-fixed, paraffin-embedded breast cancer tissues.

Sánchez-Navarro I, Gámez-Pozo A, González-Barón M, Pinto-Marín A, Hardisson D, López R, Madero R, Cejas P, Mendiola M, Espinosa E, Vara JA.

Biotechniques. 2010 May;48(5):389-97. doi: 10.2144/000113388.

17.

Application of array CGH on archival formalin-fixed paraffin-embedded tissues including small numbers of microdissected cells.

Johnson NA, Hamoudi RA, Ichimura K, Liu L, Pearson DM, Collins VP, Du MQ.

Lab Invest. 2006 Sep;86(9):968-78. Epub 2006 Jun 5.

18.

Quality control of RNA preservation and extraction from paraffin-embedded tissue: implications for RT-PCR and microarray analysis.

Kashofer K, Viertler C, Pichler M, Zatloukal K.

PLoS One. 2013 Jul 31;8(7):e70714. doi: 10.1371/journal.pone.0070714. Print 2013.

19.

Genome-wide gene expression profiling of formalin-fixed paraffin-embedded breast cancer core biopsies using microarrays.

Budczies J, Weichert W, Noske A, Müller BM, Weller C, Wittenberger T, Hofmann HP, Dietel M, Denkert C, Gekeler V.

J Histochem Cytochem. 2011 Feb;59(2):146-57. doi: 10.1369/jhc.2010.956607.

20.

Interpretation of genome-wide infinium methylation data from ligated DNA in formalin-fixed, paraffin-embedded paired tumor and normal tissue.

Jasmine F, Rahaman R, Roy S, Raza M, Paul R, Rakibuz-Zaman M, Paul-Brutus R, Dodsworth C, Kamal M, Ahsan H, Kibriya MG.

BMC Res Notes. 2012 Feb 22;5:117. doi: 10.1186/1756-0500-5-117.

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