Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 81

1.

An experimentally derived confidence score for binary protein-protein interactions.

Braun P, Tasan M, Dreze M, Barrios-Rodiles M, Lemmens I, Yu H, Sahalie JM, Murray RR, Roncari L, de Smet AS, Venkatesan K, Rual JF, Vandenhaute J, Cusick ME, Pawson T, Hill DE, Tavernier J, Wrana JL, Roth FP, Vidal M.

Nat Methods. 2009 Jan;6(1):91-7. doi: 10.1038/nmeth.1281. Epub 2008 Dec 7.

2.

An empirical framework for binary interactome mapping.

Venkatesan K, Rual JF, Vazquez A, Stelzl U, Lemmens I, Hirozane-Kishikawa T, Hao T, Zenkner M, Xin X, Goh KI, Yildirim MA, Simonis N, Heinzmann K, Gebreab F, Sahalie JM, Cevik S, Simon C, de Smet AS, Dann E, Smolyar A, Vinayagam A, Yu H, Szeto D, Borick H, Dricot A, Klitgord N, Murray RR, Lin C, Lalowski M, Timm J, Rau K, Boone C, Braun P, Cusick ME, Roth FP, Hill DE, Tavernier J, Wanker EE, Barabási AL, Vidal M.

Nat Methods. 2009 Jan;6(1):83-90. doi: 10.1038/nmeth.1280. Epub 2008 Dec 7.

3.

Interactome mapping for analysis of complex phenotypes: insights from benchmarking binary interaction assays.

Braun P.

Proteomics. 2012 May;12(10):1499-518. doi: 10.1002/pmic.201100598. Review.

PMID:
22589225
4.

An integrated approach to the prediction of domain-domain interactions.

Lee H, Deng M, Sun F, Chen T.

BMC Bioinformatics. 2006 May 25;7:269.

5.

High-quality binary interactome mapping.

Dreze M, Monachello D, Lurin C, Cusick ME, Hill DE, Vidal M, Braun P.

Methods Enzymol. 2010;470:281-315. doi: 10.1016/S0076-6879(10)70012-4. Epub 2010 Mar 1.

PMID:
20946815
6.

Identifying binary protein-protein interactions from affinity purification mass spectrometry data.

Zhang XF, Ou-Yang L, Hu X, Dai DQ.

BMC Genomics. 2015 Oct 5;16:745. doi: 10.1186/s12864-015-1944-z.

7.

A novel scoring approach for protein co-purification data reveals high interaction specificity.

Yu X, Ivanic J, Wallqvist A, Reifman J.

PLoS Comput Biol. 2009 Sep;5(9):e1000515. doi: 10.1371/journal.pcbi.1000515. Epub 2009 Sep 25.

8.

Assessment of high-confidence protein-protein interactome in yeast.

Karagoz K, Arga KY.

Comput Biol Chem. 2013 Aug;45:1-8. doi: 10.1016/j.compbiolchem.2013.03.002. Epub 2013 Mar 26.

PMID:
23608186
9.

Predicting protein complexes by data integration of different types of interactions.

Tan PP, Dargahi D, Pio F.

Int J Comput Biol Drug Des. 2010;3(1):19-30. doi: 10.1504/IJCBDD.2010.034464. Epub 2010 Aug 5.

PMID:
20693608
10.

Assigning confidence scores to protein-protein interactions.

Yu J, Murali T, Finley RL Jr.

Methods Mol Biol. 2012;812:161-74. doi: 10.1007/978-1-61779-455-1_9.

PMID:
22218859
11.

Inferring physical protein contacts from large-scale purification data of protein complexes.

Schelhorn SE, Mestre J, Albrecht M, Zotenko E.

Mol Cell Proteomics. 2011 Jun;10(6):M110.004929. doi: 10.1074/mcp.M110.004929. Epub 2011 Mar 30.

12.

Profiling protein interaction networks with functional protein microarrays.

Mattoon DR, Schweitzer B.

Methods Mol Biol. 2009;563:63-74. doi: 10.1007/978-1-60761-175-2_4.

PMID:
19597780
13.

SAINT: probabilistic scoring of affinity purification-mass spectrometry data.

Choi H, Larsen B, Lin ZY, Breitkreutz A, Mellacheruvu D, Fermin D, Qin ZS, Tyers M, Gingras AC, Nesvizhskii AI.

Nat Methods. 2011 Jan;8(1):70-3. doi: 10.1038/nmeth.1541. Epub 2010 Dec 5.

14.

Functional evaluation of domain-domain interactions and human protein interaction networks.

Schlicker A, Huthmacher C, Ramírez F, Lengauer T, Albrecht M.

Bioinformatics. 2007 Apr 1;23(7):859-65.

PMID:
17456608
15.

Characterization and prediction of protein-protein interactions within and between complexes.

Sprinzak E, Altuvia Y, Margalit H.

Proc Natl Acad Sci U S A. 2006 Oct 3;103(40):14718-23. Epub 2006 Sep 26.

16.

Structural domain-domain interactions: assessment and comparison with protein-protein interaction data to improve the interactome.

Prieto C, De Las Rivas J.

Proteins. 2010 Jan;78(1):109-17. doi: 10.1002/prot.22569.

PMID:
19731379
17.

Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology.

Lin CY, Chen SH, Cho CS, Chen CL, Lin FK, Lin CH, Chen PY, Lo CZ, Hsiung CA.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S18.

18.

Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale.

Li H, Li J, Wong L.

Bioinformatics. 2006 Apr 15;22(8):989-96. Epub 2006 Jan 29.

PMID:
16446278
19.
20.

Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service.

Kim JG, Park D, Kim BC, Cho SW, Kim YT, Park YJ, Cho HJ, Park H, Kim KB, Yoon KO, Park SJ, Lee BM, Bhak J.

BMC Bioinformatics. 2008 Jan 24;9:41. doi: 10.1186/1471-2105-9-41.

Supplemental Content

Support Center