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Items: 1 to 20 of 154

1.

De novo protein structure generation from incomplete chemical shift assignments.

Shen Y, Vernon R, Baker D, Bax A.

J Biomol NMR. 2009 Feb;43(2):63-78. doi: 10.1007/s10858-008-9288-5. Epub 2008 Nov 26.

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Consistent blind protein structure generation from NMR chemical shift data.

Shen Y, Lange O, Delaglio F, Rossi P, Aramini JM, Liu G, Eletsky A, Wu Y, Singarapu KK, Lemak A, Ignatchenko A, Arrowsmith CH, Szyperski T, Montelione GT, Baker D, Bax A.

Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4685-90. doi: 10.1073/pnas.0800256105. Epub 2008 Mar 7.

5.

Folding of small proteins by Monte Carlo simulations with chemical shift restraints without the use of molecular fragment replacement or structural homology.

Robustelli P, Cavalli A, Dobson CM, Vendruscolo M, Salvatella X.

J Phys Chem B. 2009 Jun 4;113(22):7890-6. doi: 10.1021/jp900780b.

PMID:
19425536
6.

Improved chemical shift based fragment selection for CS-Rosetta using Rosetta3 fragment picker.

Vernon R, Shen Y, Baker D, Lange OF.

J Biomol NMR. 2013 Oct;57(2):117-27. doi: 10.1007/s10858-013-9772-4. Epub 2013 Aug 22.

PMID:
23975356
8.

On the problem of resonance assignments in solid state NMR of uniformly ¹⁵N,¹³C-labeled proteins.

Tycko R.

J Magn Reson. 2015 Apr;253:166-72. doi: 10.1016/j.jmr.2015.02.006.

9.

Protein NMR structures refined with Rosetta have higher accuracy relative to corresponding X-ray crystal structures.

Mao B, Tejero R, Baker D, Montelione GT.

J Am Chem Soc. 2014 Feb 5;136(5):1893-906. doi: 10.1021/ja409845w. Epub 2014 Jan 23.

10.

Influence of ¹H chemical shift assignments of the interface residues on structure determinations of homodimeric proteins.

Lin YJ, Kirchner DK, Güntert P.

J Magn Reson. 2012 Sep;222:96-104. doi: 10.1016/j.jmr.2012.07.001. Epub 2012 Jul 14.

PMID:
22858667
11.

Accurate automated protein NMR structure determination using unassigned NOESY data.

Raman S, Huang YJ, Mao B, Rossi P, Aramini JM, Liu G, Montelione GT, Baker D.

J Am Chem Soc. 2010 Jan 13;132(1):202-7. doi: 10.1021/ja905934c.

12.

Robust and highly accurate automatic NOESY assignment and structure determination with Rosetta.

Zhang Z, Porter J, Tripsianes K, Lange OF.

J Biomol NMR. 2014 Jul;59(3):135-45. doi: 10.1007/s10858-014-9832-4. Epub 2014 May 21.

PMID:
24845473
13.

Improving NMR protein structure quality by Rosetta refinement: a molecular replacement study.

Ramelot TA, Raman S, Kuzin AP, Xiao R, Ma LC, Acton TB, Hunt JF, Montelione GT, Baker D, Kennedy MA.

Proteins. 2009 Apr;75(1):147-67. doi: 10.1002/prot.22229.

14.

Resonance assignment of the NMR spectra of disordered proteins using a multi-objective non-dominated sorting genetic algorithm.

Yang Y, Fritzsching KJ, Hong M.

J Biomol NMR. 2013 Nov;57(3):281-96. doi: 10.1007/s10858-013-9788-9. Epub 2013 Oct 17.

15.

CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data.

Wishart DS, Arndt D, Berjanskii M, Tang P, Zhou J, Lin G.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W496-502. doi: 10.1093/nar/gkn305. Epub 2008 May 30.

16.

Improved chemical shift prediction by Rosetta conformational sampling.

Tian Y, Opella SJ, Marassi FM.

J Biomol NMR. 2012 Nov;54(3):237-43. doi: 10.1007/s10858-012-9677-7. Epub 2012 Sep 25.

17.

De novo protein structure determination using sparse NMR data.

Bowers PM, Strauss CE, Baker D.

J Biomol NMR. 2000 Dec;18(4):311-8.

PMID:
11200525
18.

A probabilistic approach for validating protein NMR chemical shift assignments.

Wang B, Wang Y, Wishart DS.

J Biomol NMR. 2010 Jun;47(2):85-99. doi: 10.1007/s10858-010-9407-y. Epub 2010 May 6.

PMID:
20446018
19.

Homology modeling of larger proteins guided by chemical shifts.

Shen Y, Bax A.

Nat Methods. 2015 Aug;12(8):747-50. doi: 10.1038/nmeth.3437. Epub 2015 Jun 8.

20.

3D Computational Modeling of Proteins Using Sparse Paramagnetic NMR Data.

Pilla KB, Otting G, Huber T.

Methods Mol Biol. 2017;1526:3-21.

PMID:
27896733

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