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Items: 1 to 20 of 370

1.

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing.

Dethlefsen L, Huse S, Sogin ML, Relman DA.

PLoS Biol. 2008 Nov 18;6(11):e280. doi: 10.1371/journal.pbio.0060280.

2.

Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation.

Dethlefsen L, Relman DA.

Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4554-61. doi: 10.1073/pnas.1000087107. Epub 2010 Sep 16.

3.

Comparative analysis of Korean human gut microbiota by barcoded pyrosequencing.

Nam YD, Jung MJ, Roh SW, Kim MS, Bae JW.

PLoS One. 2011;6(7):e22109. doi: 10.1371/journal.pone.0022109. Epub 2011 Jul 29.

4.

Fungi of the murine gut: episodic variation and proliferation during antibiotic treatment.

Dollive S, Chen YY, Grunberg S, Bittinger K, Hoffmann C, Vandivier L, Cuff C, Lewis JD, Wu GD, Bushman FD.

PLoS One. 2013 Aug 19;8(8):e71806. doi: 10.1371/journal.pone.0071806. eCollection 2013.

5.

Determining the Long-term Effect of Antibiotic Administration on the Human Normal Intestinal Microbiota Using Culture and Pyrosequencing Methods.

Rashid MU, Zaura E, Buijs MJ, Keijser BJ, Crielaard W, Nord CE, Weintraub A.

Clin Infect Dis. 2015 May 15;60 Suppl 2:S77-84. doi: 10.1093/cid/civ137.

PMID:
25922405
6.

Short-term effect of antibiotics on human gut microbiota.

Panda S, El khader I, Casellas F, López Vivancos J, García Cors M, Santiago A, Cuenca S, Guarner F, Manichanh C.

PLoS One. 2014 Apr 18;9(4):e95476. doi: 10.1371/journal.pone.0095476. eCollection 2014.

7.

Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine.

Claesson MJ, O'Sullivan O, Wang Q, Nikkilä J, Marchesi JR, Smidt H, de Vos WM, Ross RP, O'Toole PW.

PLoS One. 2009 Aug 20;4(8):e6669. doi: 10.1371/journal.pone.0006669.

8.

The effect of the macrolide antibiotic tylosin on microbial diversity in the canine small intestine as demonstrated by massive parallel 16S rRNA gene sequencing.

Suchodolski JS, Dowd SE, Westermarck E, Steiner JM, Wolcott RD, Spillmann T, Harmoinen JA.

BMC Microbiol. 2009 Oct 2;9:210. doi: 10.1186/1471-2180-9-210.

9.

Antibiotic supplement in feed can perturb the intestinal microbial composition and function in Pacific white shrimp.

Zeng S, Hou D, Liu J, Ji P, Weng S, He J, Huang Z.

Appl Microbiol Biotechnol. 2019 Apr;103(7):3111-3122. doi: 10.1007/s00253-019-09671-9. Epub 2019 Feb 27.

PMID:
30815709
10.

Bacterial community composition in the gut content of Lampetra japonica revealed by 16S rRNA gene pyrosequencing.

Zuo Y, Xie W, Pang Y, Li T, Li Q, Li Y.

PLoS One. 2017 Dec 5;12(12):e0188919. doi: 10.1371/journal.pone.0188919. eCollection 2017.

11.

Reproducible community dynamics of the gastrointestinal microbiota following antibiotic perturbation.

Antonopoulos DA, Huse SM, Morrison HG, Schmidt TM, Sogin ML, Young VB.

Infect Immun. 2009 Jun;77(6):2367-75. doi: 10.1128/IAI.01520-08. Epub 2009 Mar 23.

12.

Characterization of the fecal bacteria communities of forage-fed horses by pyrosequencing of 16S rRNA V4 gene amplicons.

Shepherd ML, Swecker WS Jr, Jensen RV, Ponder MA.

FEMS Microbiol Lett. 2012 Jan;326(1):62-8. doi: 10.1111/j.1574-6968.2011.02434.x. Epub 2011 Nov 2.

13.

Gut microbiota disturbance during antibiotic therapy: a multi-omic approach.

Pérez-Cobas AE, Gosalbes MJ, Friedrichs A, Knecht H, Artacho A, Eismann K, Otto W, Rojo D, Bargiela R, von Bergen M, Neulinger SC, Däumer C, Heinsen FA, Latorre A, Barbas C, Seifert J, dos Santos VM, Ott SJ, Ferrer M, Moya A.

Gut. 2013 Nov;62(11):1591-601. doi: 10.1136/gutjnl-2012-303184. Epub 2012 Dec 12.

14.

Membership and behavior of ultra-low-diversity pathogen communities present in the gut of humans during prolonged critical illness.

Zaborin A, Smith D, Garfield K, Quensen J, Shakhsheer B, Kade M, Tirrell M, Tiedje J, Gilbert JA, Zaborina O, Alverdy JC.

MBio. 2014 Sep 23;5(5):e01361-14. doi: 10.1128/mBio.01361-14.

15.

Spatial heterogeneity and stability of bacterial community in the gastrointestinal tracts of broiler chickens.

Choi JH, Kim GB, Cha CJ.

Poult Sci. 2014 Aug;93(8):1942-50. doi: 10.3382/ps.2014-03974. Epub 2014 Jun 15.

PMID:
24931967
16.

Gut microbiota dynamics and functionality in Reticulitermes grassei after a 7-day dietary shift and ciprofloxacin treatment.

Berlanga M, Palau M, Guerrero R.

PLoS One. 2018 Dec 27;13(12):e0209789. doi: 10.1371/journal.pone.0209789. eCollection 2018.

17.

Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States.

Lin A, Bik EM, Costello EK, Dethlefsen L, Haque R, Relman DA, Singh U.

PLoS One. 2013;8(1):e53838. doi: 10.1371/journal.pone.0053838. Epub 2013 Jan 22.

18.

Dynamic changes of the luminal and mucosa-associated gut microbiota during and after antibiotic therapy with paromomycin.

Heinsen FA, Knecht H, Neulinger SC, Schmitz RA, Knecht C, Kühbacher T, Rosenstiel PC, Schreiber S, Friedrichs AK, Ott SJ.

Gut Microbes. 2015 Jul 4;6(4):243-54. doi: 10.1080/19490976.2015.1062959.

19.

Collateral damage from oral ciprofloxacin versus nitrofurantoin in outpatients with urinary tract infections: a culture-free analysis of gut microbiota.

Stewardson AJ, Gaïa N, François P, Malhotra-Kumar S, Delémont C, Martinez de Tejada B, Schrenzel J, Harbarth S, Lazarevic V; SATURN WP1 and WP3 Study Groups.

Clin Microbiol Infect. 2015 Apr;21(4):344.e1-11. doi: 10.1016/j.cmi.2014.11.016. Epub 2014 Nov 25.

20.

Sampling and pyrosequencing methods for characterizing bacterial communities in the human gut using 16S sequence tags.

Wu GD, Lewis JD, Hoffmann C, Chen YY, Knight R, Bittinger K, Hwang J, Chen J, Berkowsky R, Nessel L, Li H, Bushman FD.

BMC Microbiol. 2010 Jul 30;10:206. doi: 10.1186/1471-2180-10-206.

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