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Items: 1 to 20 of 240

1.

Gene set enrichment analysis for non-monotone association and multiple experimental categories.

Lin R, Dai S, Irwin RD, Heinloth AN, Boorman GA, Li L.

BMC Bioinformatics. 2008 Nov 14;9:481. doi: 10.1186/1471-2105-9-481.

2.

Improving gene set analysis of microarray data by SAM-GS.

Dinu I, Potter JD, Mueller T, Liu Q, Adewale AJ, Jhangri GS, Einecke G, Famulski KS, Halloran P, Yasui Y.

BMC Bioinformatics. 2007 Jul 5;8:242.

3.

Extensions to gene set enrichment.

Jiang Z, Gentleman R.

Bioinformatics. 2007 Feb 1;23(3):306-13. Epub 2006 Nov 24.

PMID:
17127676
4.

Gene set enrichment analysis made simple.

Irizarry RA, Wang C, Zhou Y, Speed TP.

Stat Methods Med Res. 2009 Dec;18(6):565-75. doi: 10.1177/0962280209351908. Erratum in: Stat Methods Med Res. 2011 Oct;20(5):571.

5.

Concordant integrative gene set enrichment analysis of multiple large-scale two-sample expression data sets.

Lai Y, Zhang F, Nayak TK, Modarres R, Lee NH, McCaffrey TA.

BMC Genomics. 2014;15 Suppl 1:S6. doi: 10.1186/1471-2164-15-S1-S6. Epub 2014 Jan 24.

6.

Comparative study of gene set enrichment methods.

Abatangelo L, Maglietta R, Distaso A, D'Addabbo A, Creanza TM, Mukherjee S, Ancona N.

BMC Bioinformatics. 2009 Sep 2;10:275. doi: 10.1186/1471-2105-10-275.

7.

Gene expression analysis in clear cell renal cell carcinoma using gene set enrichment analysis for biostatistical management.

Maruschke M, Reuter D, Koczan D, Hakenberg OW, Thiesen HJ.

BJU Int. 2011 Jul;108(2 Pt 2):E29-35. doi: 10.1111/j.1464-410X.2010.09794.x. Epub 2011 Mar 16.

8.

BubbleGUM: automatic extraction of phenotype molecular signatures and comprehensive visualization of multiple Gene Set Enrichment Analyses.

Spinelli L, Carpentier S, Montañana Sanchis F, Dalod M, Vu Manh TP.

BMC Genomics. 2015 Oct 19;16:814. doi: 10.1186/s12864-015-2012-4.

9.

Multiple testing for gene sets from microarray experiments.

Sohn I, Owzar K, Lim J, George SL, Mackey Cushman S, Jung SH.

BMC Bioinformatics. 2011 May 26;12:209. doi: 10.1186/1471-2105-12-209.

10.

PAGE: parametric analysis of gene set enrichment.

Kim SY, Volsky DJ.

BMC Bioinformatics. 2005 Jun 8;6:144.

11.

Appearance frequency modulated gene set enrichment testing.

Ma J, Sartor MA, Jagadish HV.

BMC Bioinformatics. 2011 Mar 20;12:81. doi: 10.1186/1471-2105-12-81.

12.

Linear combination test for gene set analysis of a continuous phenotype.

Dinu I, Wang X, Kelemen LE, Vatanpour S, Pyne S.

BMC Bioinformatics. 2013 Jul 1;14:212. doi: 10.1186/1471-2105-14-212.

13.

Rotation testing in gene set enrichment analysis for small direct comparison experiments.

Dørum G, Snipen L, Solheim M, Saebø S.

Stat Appl Genet Mol Biol. 2009;8:Article34. doi: 10.2202/1544-6115.1418. Epub 2009 Jul 27.

PMID:
19645689
14.

A multivariate extension of the gene set enrichment analysis.

Klebanov L, Glazko G, Salzman P, Yakovlev A, Xiao Y.

J Bioinform Comput Biol. 2007 Oct;5(5):1139-53.

PMID:
17933015
15.

Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.

Zhang Y, Xuan J, de los Reyes BG, Clarke R, Ressom HW.

BMC Bioinformatics. 2008 Apr 21;9:203. doi: 10.1186/1471-2105-9-203.

16.

Gene set analysis using variance component tests.

Huang YT, Lin X.

BMC Bioinformatics. 2013 Jun 28;14:210. doi: 10.1186/1471-2105-14-210.

17.

Testing gene set enrichment for subset of genes: Sub-GSE.

Yan X, Sun F.

BMC Bioinformatics. 2008 Sep 2;9:362. doi: 10.1186/1471-2105-9-362.

18.

A meta-data based method for DNA microarray imputation.

Jörnsten R, Ouyang M, Wang HY.

BMC Bioinformatics. 2007 Mar 29;8:109.

19.

Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases.

Cavalieri D, Castagnini C, Toti S, Maciag K, Kelder T, Gambineri L, Angioli S, Dolara P.

Bioinformatics. 2007 Oct 1;23(19):2631-2. Epub 2007 Jun 28.

PMID:
17599938
20.

Random forests-based differential analysis of gene sets for gene expression data.

Hsueh HM, Zhou DW, Tsai CA.

Gene. 2013 Apr 10;518(1):179-86. doi: 10.1016/j.gene.2012.11.034. Epub 2012 Dec 6.

PMID:
23219997

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