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Biological and functional analysis of statistically significant pathways deregulated in colon cancer by using gene expression profiles.

Distaso A, Abatangelo L, Maglietta R, Creanza TM, Piepoli A, Carella M, D'Addabbo A, Ancona N.

Int J Biol Sci. 2008;4(6):368-78.


Statistical assessment of functional categories of genes deregulated in pathological conditions by using microarray data.

Maglietta R, Piepoli A, Catalano D, Licciulli F, Carella M, Liuni S, Pesole G, Perri F, Ancona N.

Bioinformatics. 2007 Aug 15;23(16):2063-72.


Differences in gene expression profiles and carcinogenesis pathways between colon and rectal cancer.

Li JN, Zhao L, Wu J, Wu B, Yang H, Zhang HH, Qian JM.

J Dig Dis. 2012 Jan;13(1):24-32. doi: 10.1111/j.1751-2980.2011.00551.x.


On the statistical assessment of classifiers using DNA microarray data.

Ancona N, Maglietta R, Piepoli A, D'Addabbo A, Cotugno R, Savino M, Liuni S, Carella M, Pesole G, Perri F.

BMC Bioinformatics. 2006 Aug 19;7:387.


Selection of relevant genes in cancer diagnosis based on their prediction accuracy.

Maglietta R, D'Addabbo A, Piepoli A, Perri F, Liuni S, Pesole G, Ancona N.

Artif Intell Med. 2007 May;40(1):29-44.


Comparative study of gene expression by cDNA microarray in human colorectal cancer tissues and normal mucosa.

Bianchini M, Levy E, Zucchini C, Pinski V, Macagno C, De Sanctis P, Valvassori L, Carinci P, Mordoh J.

Int J Oncol. 2006 Jul;29(1):83-94.


Prognosis of stage II colon cancer by non-neoplastic mucosa gene expression profiling.

Barrier A, Roser F, Boëlle PY, Franc B, Tse C, Brault D, Lacaine F, Houry S, Callard P, Penna C, Debuire B, Flahault A, Dudoit S, Lemoine A.

Oncogene. 2007 Apr 19;26(18):2642-8.


Identification of single- and multiple-class specific signature genes from gene expression profiles by group marker index.

Tsai YS, Aguan K, Pal NR, Chung IF.

PLoS One. 2011;6(9):e24259. doi: 10.1371/journal.pone.0024259.


Molecular pathways undergoing dramatic transcriptomic changes during tumor development in the human colon.

Maglietta R, Liuzzi VC, Cattaneo E, Laczko E, Piepoli A, Panza A, Carella M, Palumbo O, Staiano T, Buffoli F, Andriulli A, Marra G, Ancona N.

BMC Cancer. 2012 Dec 19;12:608. doi: 10.1186/1471-2407-12-608.


Gene profiles between non-invasive and invasive colon cancer using laser microdissection and polypeptide analysis.

Zhu JS, Guo H, Song MQ, Chen GQ, Sun Q, Zhang Q.

World J Gastroenterol. 2008 Oct 14;14(38):5887-92.


Average rank-based score to measure deregulation of molecular pathway gene sets.

Yang H, Cheng C, Zhang W.

PLoS One. 2011;6(11):e27579. doi: 10.1371/journal.pone.0027579.


Functional heterogeneity of cancer-associated fibroblasts from human colon tumors shows specific prognostic gene expression signature.

Herrera M, Islam AB, Herrera A, Martín P, García V, Silva J, Garcia JM, Salas C, Casal I, de Herreros AG, Bonilla F, Peña C.

Clin Cancer Res. 2013 Nov 1;19(21):5914-26. doi: 10.1158/1078-0432.CCR-13-0694.


Identification of DNA methylation in 3' genomic regions that are associated with upregulation of gene expression in colorectal cancer.

Smith JF, Mahmood S, Song F, Morrow A, Smiraglia D, Zhang X, Rajput A, Higgins MJ, Krumm A, Petrelli NJ, Costello JF, Nagase H, Plass C, Held WA.

Epigenetics. 2007 Sep;2(3):161-72.


Key pathways involved in prostate cancer based on gene set enrichment analysis and meta analysis.

Ning QY, Wu JZ, Zang N, Liang J, Hu YL, Mo ZN.

Genet Mol Res. 2011 Dec 14;10(4):3856-87. doi: 10.4238/2011.December.14.10.


Expression profiling of colon cancer cell lines and colon biopsies: towards a screening system for potential cancer-preventive compounds.

van Erk MJ, Krul CA, Caldenhoven E, Stierum RH, Peters WH, Woutersen RA, van Ommen B.

Eur J Cancer Prev. 2005 Oct;14(5):439-57.


cDNA microarray gene expression profiling of hedgehog signaling pathway inhibition in human colon cancer cells.

Shi T, Mazumdar T, Devecchio J, Duan ZH, Agyeman A, Aziz M, Houghton JA.

PLoS One. 2010 Oct 1;5(10). pii: e13054. doi: 10.1371/journal.pone.0013054.


D-Serine exposure resulted in gene expression changes implicated in neurodegenerative disorders and neuronal dysfunction in male Fischer 344 rats.

Davidson ME, Kerepesi LA, Soto A, Chan VT.

Arch Toxicol. 2009 Aug;83(8):747-62. doi: 10.1007/s00204-009-0405-3.


Joint analysis of two microarray gene-expression data sets to select lung adenocarcinoma marker genes.

Jiang H, Deng Y, Chen HS, Tao L, Sha Q, Chen J, Tsai CJ, Zhang S.

BMC Bioinformatics. 2004 Jun 24;5:81.


Colorectal adenoma to carcinoma progression is accompanied by changes in gene expression associated with ageing, chromosomal instability, and fatty acid metabolism.

Carvalho B, Sillars-Hardebol AH, Postma C, Mongera S, Terhaar Sive Droste J, Obulkasim A, van de Wiel M, van Criekinge W, Ylstra B, Fijneman RJ, Meijer GA.

Cell Oncol (Dordr). 2012 Feb;35(1):53-63. doi: 10.1007/s13402-011-0065-1.


ApcMin/+ mouse model of colon cancer: gene expression profiling in tumors.

Leclerc D, Deng L, Trasler J, Rozen R.

J Cell Biochem. 2004 Dec 15;93(6):1242-54.


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