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Items: 1 to 20 of 99

1.

Thermodynamic examination of trinucleotide bulged RNA in the context of HIV-1 TAR RNA.

Carter-O'Connell I, Booth D, Eason B, Grover N.

RNA. 2008 Dec;14(12):2550-6. doi: 10.1261/rna.1004108. Epub 2008 Oct 24.

2.

Impact of the terminal bulges of HIV-1 cTAR DNA on its stability and the destabilizing activity of the nucleocapsid protein NCp7.

Beltz H, Azoulay J, Bernacchi S, Clamme JP, Ficheux D, Roques B, Darlix JL, Mély Y.

J Mol Biol. 2003 Apr 18;328(1):95-108.

PMID:
12684000
4.

Stability of the TAR RNA and its complex with arginine.

Sugimoto N, Ohmichi T, Tanaka A, Matsumura A, Sasaki M.

Nucleic Acids Symp Ser. 1993;(29):167-8.

PMID:
8247753
6.

Recognition of DNA/RNA bulges by antimicrobial and antitumor metallohelices.

Malina J, Scott P, Brabec V.

Dalton Trans. 2015 Sep 7;44(33):14656-65. doi: 10.1039/c5dt02018b.

PMID:
26212708
7.

Non-nearest-neighbor dependence of the stability for RNA bulge loops based on the complete set of group I single-nucleotide bulge loops.

Blose JM, Manni ML, Klapec KA, Stranger-Jones Y, Zyra AC, Sim V, Griffith CA, Long JD, Serra MJ.

Biochemistry. 2007 Dec 25;46(51):15123-35. Epub 2007 Nov 30.

8.

Major groove opening at the HIV-1 Tat binding site of TAR RNA evidenced by a rhodium probe.

Neenhold HR, Rana TM.

Biochemistry. 1995 May 16;34(19):6303-9.

PMID:
7756257
9.

Thermodynamic examination of 1- to 5-nt purine bulge loops in RNA and DNA constructs.

Strom S, Shiskova E, Hahm Y, Grover N.

RNA. 2015 Jul;21(7):1313-22. doi: 10.1261/rna.046631.114. Epub 2015 May 28.

10.

Interaction of human immunodeficiency virus type 1 Tat-derived peptides with TAR RNA.

Long KS, Crothers DM.

Biochemistry. 1995 Jul 11;34(27):8885-95.

PMID:
7612630
11.
12.

RNA recognition by Tat-derived peptides: interaction in the major groove?

Weeks KM, Crothers DM.

Cell. 1991 Aug 9;66(3):577-88. Erratum in: Cell 1992 Sep 18;70(6):following 1068.

PMID:
1907891
13.

High affinity binding of TAR RNA by the human immunodeficiency virus type-1 tat protein requires base-pairs in the RNA stem and amino acid residues flanking the basic region.

Churcher MJ, Lamont C, Hamy F, Dingwall C, Green SM, Lowe AD, Butler JG, Gait MJ, Karn J.

J Mol Biol. 1993 Mar 5;230(1):90-110.

PMID:
8450553
14.
15.
16.

An ethidium analogue that binds with high specificity to a base-bulged duplex from the TAR RNA region of the HIV-I genome.

Ratmeyer LS, Vinayak R, Zon G, Wilson WD.

J Med Chem. 1992 Mar 6;35(5):966-8. No abstract available.

PMID:
1548686
17.
19.

NMR structure of stem-loop SL2 of the HIV-1 psi RNA packaging signal reveals a novel A-U-A base-triple platform.

Amarasinghe GK, De Guzman RN, Turner RB, Summers MF.

J Mol Biol. 2000 May 26;299(1):145-56.

PMID:
10860728
20.

Kinking of RNA helices by bulged bases, and the structure of the human immunodeficiency virus transactivator response element.

Riordan FA, Bhattacharyya A, McAteer S, Lilley DM.

J Mol Biol. 1992 Jul 20;226(2):305-10.

PMID:
1640450

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