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Items: 1 to 20 of 123

1.
2.

A picture of gene sampling/expression in model organisms using ESTs and KOG proteins.

Mudado Mde A, Ortega JM.

Genet Mol Res. 2006 Mar 31;5(1):242-53.

3.

Efficient secondary database driven annotation using model organism sequences.

Faria-Campos AC, Campos SV, Prosdocimi F, Franco GC, Franco GR, Ortega JM.

In Silico Biol. 2006;6(5):363-72.

PMID:
17274765
4.

annot8r: GO, EC and KEGG annotation of EST datasets.

Schmid R, Blaxter ML.

BMC Bioinformatics. 2008 Apr 9;9:180. doi: 10.1186/1471-2105-9-180.

5.
6.

GarlicESTdb: an online database and mining tool for garlic EST sequences.

Kim DW, Jung TS, Nam SH, Kwon HR, Kim A, Chae SH, Choi SH, Kim DW, Kim RN, Park HS.

BMC Plant Biol. 2009 May 18;9:61. doi: 10.1186/1471-2229-9-61.

7.

Genomic annotation of 15,809 ESTs identified from pooled early gestation human eyes.

Choy KW, Wang CC, Ogura A, Lau TK, Rogers MS, Ikeo K, Gojobori T, Lam DS, Pang CP.

Physiol Genomics. 2006 Mar 13;25(1):9-15. Epub 2005 Dec 20.

PMID:
16368877
8.

FramePlus: aligning DNA to protein sequences.

Halperin E, Faigler S, Gill-More R.

Bioinformatics. 1999 Nov;15(11):867-73.

PMID:
10743553
9.

galaxieEST: addressing EST identity through automated phylogenetic analysis.

Nilsson RH, Rajashekar B, Larsson KH, Ursing BM.

BMC Bioinformatics. 2004 Jul 5;5:87.

10.

OrthoDisease: a database of human disease orthologs.

O'Brien KP, Westerlund I, Sonnhammer EL.

Hum Mutat. 2004 Aug;24(2):112-9.

PMID:
15241792
11.

Genome-wide prediction of C. elegans genetic interactions.

Zhong W, Sternberg PW.

Science. 2006 Mar 10;311(5766):1481-4.

12.

The Diatom EST Database.

Maheswari U, Montsant A, Goll J, Krishnasamy S, Rajyashri KR, Patell VM, Bowler C.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D344-7.

13.

Construction and characterization of a rock-cluster-based EST analysis pipeline.

Zhu T, Zhou J, An Y, Zhou J, Li H, Xu G, Ma D.

Comput Biol Chem. 2006 Feb;30(1):81-6. Erratum in: Comput Biol Chem. 2008 Dec;32(6):469.

PMID:
16321574
14.

PESTAS: a web server for EST analysis and sequence mining.

Nam SH, Kim DW, Jung TS, Choi YS, Kim DW, Choi HS, Choi SH, Park HS.

Bioinformatics. 2009 Jul 15;25(14):1846-8. doi: 10.1093/bioinformatics/btp293. Epub 2009 May 4.

PMID:
19414531
15.

Detection of periodicity in eukaryotic genomes on the basis of power spectrum analysis.

Fukushima A, Ikemura T, Oshima T, Mori H, Kanaya S.

Genome Inform. 2002;13:21-9.

PMID:
14571371
16.

Expressed sequence tags: analysis and annotation.

Parkinson J, Blaxter M.

Methods Mol Biol. 2004;270:93-126.

PMID:
15153624
17.

KAAS: an automatic genome annotation and pathway reconstruction server.

Moriya Y, Itoh M, Okuda S, Yoshizawa AC, Kanehisa M.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. Epub 2007 May 25.

18.

ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.

Nagaraj SH, Deshpande N, Gasser RB, Ranganathan S.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W143-7. Epub 2007 Jun 1.

19.

ArrayIDer: automated structural re-annotation pipeline for DNA microarrays.

van den Berg BH, Konieczka JH, McCarthy FM, Burgess SC.

BMC Bioinformatics. 2009 Jan 23;10:30. doi: 10.1186/1471-2105-10-30.

20.

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