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Items: 1 to 20 of 43

1.

Cross-chip probe matching tool: A web-based tool for linking microarray probes within and across plant species.

Ghanekar R, Srinivasasainagendra V, Page GP.

Int J Plant Genomics. 2008;2008:451327. doi: 10.1155/2008/451327.

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Sequence-matched probes produce increased cross-platform consistency and more reproducible biological results in microarray-based gene expression measurements.

Mecham BH, Klus GT, Strovel J, Augustus M, Byrne D, Bozso P, Wetmore DZ, Mariani TJ, Kohane IS, Szallasi Z.

Nucleic Acids Res. 2004 May 25;32(9):e74.

6.

Combining gene expression data from different generations of oligonucleotide arrays.

Hwang KB, Kong SW, Greenberg SA, Park PJ.

BMC Bioinformatics. 2004 Oct 25;5:159.

7.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

8.

ProbeLynx: a tool for updating the association of microarray probes to genes.

Roche FM, Hokamp K, Acab M, Babiuk LA, Hancock RE, Brinkman FS.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W471-4.

9.

A comparison of Affymetrix gene expression arrays.

Robinson MD, Speed TP.

BMC Bioinformatics. 2007 Nov 15;8:449.

10.

Microarray data mining using gene ontology.

Li S, Becich MJ, Gilbertson J.

Stud Health Technol Inform. 2004;107(Pt 2):778-82.

PMID:
15360918
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A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

Alberts R, Terpstra P, Hardonk M, Bystrykh LV, de Haan G, Breitling R, Nap JP, Jansen RC.

BMC Bioinformatics. 2007 Apr 20;8:132.

13.

The Arabidopsis co-expression tool (ACT): a WWW-based tool and database for microarray-based gene expression analysis.

Jen CH, Manfield IW, Michalopoulos I, Pinney JW, Willats WG, Gilmartin PM, Westhead DR.

Plant J. 2006 Apr;46(2):336-48.

14.

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Culhane AC, Perrière G, Higgins DG.

BMC Bioinformatics. 2003 Nov 21;4:59.

15.

Long versus short oligonucleotide microarrays for the study of gene expression in nonhuman primates.

Walker SJ, Wang Y, Grant KA, Chan F, Hellmann GM.

J Neurosci Methods. 2006 Apr 15;152(1-2):179-89.

PMID:
16253343
16.

GEM-TREND: a web tool for gene expression data mining toward relevant network discovery.

Feng C, Araki M, Kunimoto R, Tamon A, Makiguchi H, Niijima S, Tsujimoto G, Okuno Y.

BMC Genomics. 2009 Sep 3;10:411. doi: 10.1186/1471-2164-10-411.

17.

Large scale real-time PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays.

Wang Y, Barbacioru C, Hyland F, Xiao W, Hunkapiller KL, Blake J, Chan F, Gonzalez C, Zhang L, Samaha RR.

BMC Genomics. 2006 Mar 21;7:59.

18.

Splicy: a web-based tool for the prediction of possible alternative splicing events from Affymetrix probeset data.

Rambaldi D, Felice B, Praz V, Bucher P, Cittaro D, Guffanti A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S17.

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Argus--a new database system for Web-based analysis of multiple microarray data sets.

Comander J, Weber GM, Gimbrone MA Jr, García-Cardeña G.

Genome Res. 2001 Sep;11(9):1603-10.

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