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Items: 1 to 20 of 85

1.

Metabolic network model of a human oral pathogen.

Mazumdar V, Snitkin ES, Amar S, Segrè D.

J Bacteriol. 2009 Jan;191(1):74-90. doi: 10.1128/JB.01123-08. Epub 2008 Oct 17.

2.
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Using a genome-scale metabolic model of Enterococcus faecalis V583 to assess amino acid uptake and its impact on central metabolism.

Veith N, Solheim M, van Grinsven KW, Olivier BG, Levering J, Grosseholz R, Hugenholtz J, Holo H, Nes I, Teusink B, Kummer U.

Appl Environ Microbiol. 2015 Mar;81(5):1622-33. doi: 10.1128/AEM.03279-14. Epub 2014 Dec 19.

4.

Genome-scale reconstruction of the Streptococcus pyogenes M49 metabolic network reveals growth requirements and indicates potential drug targets.

Levering J, Fiedler T, Sieg A, van Grinsven KW, Hering S, Veith N, Olivier BG, Klett L, Hugenholtz J, Teusink B, Kreikemeyer B, Kummer U.

J Biotechnol. 2016 Aug 20;232:25-37. doi: 10.1016/j.jbiotec.2016.01.035. Epub 2016 Mar 10.

PMID:
26970054
5.

Targeting multiple targets in Pseudomonas aeruginosa PAO1 using flux balance analysis of a reconstructed genome-scale metabolic network.

Perumal D, Samal A, Sakharkar KR, Sakharkar MK.

J Drug Target. 2011 Jan;19(1):1-13. doi: 10.3109/10611861003649753. Epub 2010 Mar 16.

PMID:
20233082
6.

Lysine acetylation is a common post-translational modification of key metabolic pathway enzymes of the anaerobe Porphyromonas gingivalis.

Butler CA, Veith PD, Nieto MF, Dashper SG, Reynolds EC.

J Proteomics. 2015 Oct 14;128:352-64. doi: 10.1016/j.jprot.2015.08.015. Epub 2015 Sep 1.

PMID:
26341301
7.

Genome-scale metabolic network analysis and drug targeting of multi-drug resistant pathogen Acinetobacter baumannii AYE.

Kim HU, Kim TY, Lee SY.

Mol Biosyst. 2010 Feb;6(2):339-48. doi: 10.1039/b916446d. Epub 2009 Dec 8.

PMID:
20094653
8.

Global genome analysis of the shikimic acid pathway reveals greater gene loss in host-associated than in free-living bacteria.

Zucko J, Dunlap WC, Shick JM, Cullum J, Cercelet F, Amin B, Hammen L, Lau T, Williams J, Hranueli D, Long PF.

BMC Genomics. 2010 Nov 11;11:628. doi: 10.1186/1471-2164-11-628.

10.

Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p.

Moxley JF, Jewett MC, Antoniewicz MR, Villas-Boas SG, Alper H, Wheeler RT, Tong L, Hinnebusch AG, Ideker T, Nielsen J, Stephanopoulos G.

Proc Natl Acad Sci U S A. 2009 Apr 21;106(16):6477-82. doi: 10.1073/pnas.0811091106. Epub 2009 Apr 3.

11.

What can genome-scale metabolic network reconstructions do for prokaryotic systematics?

Barona-Gómez F, Cruz-Morales P, Noda-García L.

Antonie Van Leeuwenhoek. 2012 Jan;101(1):35-43. doi: 10.1007/s10482-011-9655-1. Epub 2011 Oct 21.

PMID:
22016333
12.

In silico genome-scale reconstruction and validation of the Corynebacterium glutamicum metabolic network.

Kjeldsen KR, Nielsen J.

Biotechnol Bioeng. 2009 Feb 1;102(2):583-97. doi: 10.1002/bit.22067.

PMID:
18985611
13.

Uncovering metabolic pathways relevant to phenotypic traits of microbial genomes.

Kastenmüller G, Schenk ME, Gasteiger J, Mewes HW.

Genome Biol. 2009;10(3):R28. doi: 10.1186/gb-2009-10-3-r28. Epub 2009 Mar 10.

14.

Comparative metagenomic analysis of plasmid encoded functions in the human gut microbiome.

Jones BV, Sun F, Marchesi JR.

BMC Genomics. 2010 Jan 19;11:46. doi: 10.1186/1471-2164-11-46.

15.

The oral microbiome in health and disease.

Wade WG.

Pharmacol Res. 2013 Mar;69(1):137-43. doi: 10.1016/j.phrs.2012.11.006. Epub 2012 Nov 28. Review.

PMID:
23201354
16.

Comparative analysis of metabolic networks provides insight into the evolution of plant pathogenic and nonpathogenic lifestyles in Pseudomonas.

Mithani A, Hein J, Preston GM.

Mol Biol Evol. 2011 Jan;28(1):483-99. doi: 10.1093/molbev/msq213. Epub 2010 Aug 13.

PMID:
20709733
17.

Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network.

Lee J, Yun H, Feist AM, Palsson BØ, Lee SY.

Appl Microbiol Biotechnol. 2008 Oct;80(5):849-62. doi: 10.1007/s00253-008-1654-4. Epub 2008 Aug 29.

PMID:
18758767
18.

Protein localization analysis of essential genes in prokaryotes.

Peng C, Gao F.

Sci Rep. 2014 Aug 8;4:6001. doi: 10.1038/srep06001.

19.

A genome-scale metabolic model of Methanococcus maripaludis S2 for CO2 capture and conversion to methane.

Goyal N, Widiastuti H, Karimi IA, Zhou Z.

Mol Biosyst. 2014 May;10(5):1043-54. doi: 10.1039/c3mb70421a.

PMID:
24553424
20.

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