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Items: 1 to 20 of 671

1.

The unfoldomics decade: an update on intrinsically disordered proteins.

Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S1. doi: 10.1186/1471-2164-9-S2-S1.

2.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
3.

Functional anthology of intrinsic disorder. 3. Ligands, post-translational modifications, and diseases associated with intrinsically disordered proteins.

Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN.

J Proteome Res. 2007 May;6(5):1917-32. Epub 2007 Mar 29.

4.

Unfoldomics of human diseases: linking protein intrinsic disorder with diseases.

Uversky VN, Oldfield CJ, Midic U, Xie H, Xue B, Vucetic S, Iakoucheva LM, Obradovic Z, Dunker AK.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S7. doi: 10.1186/1471-2164-10-S1-S7.

5.

Alternative splicing in concert with protein intrinsic disorder enables increased functional diversity in multicellular organisms.

Romero PR, Zaidi S, Fang YY, Uversky VN, Radivojac P, Oldfield CJ, Cortese MS, Sickmeier M, LeGall T, Obradovic Z, Dunker AK.

Proc Natl Acad Sci U S A. 2006 May 30;103(22):8390-5. Epub 2006 May 22.

6.

Protein disorder in the human diseasome: unfoldomics of human genetic diseases.

Midic U, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S12. doi: 10.1186/1471-2164-10-S1-S12.

7.

Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions.

Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, Uversky VN, Obradovic Z.

J Proteome Res. 2007 May;6(5):1882-98. Epub 2007 Mar 29.

8.

Functional anthology of intrinsic disorder. 2. Cellular components, domains, technical terms, developmental processes, and coding sequence diversities correlated with long disordered regions.

Vucetic S, Xie H, Iakoucheva LM, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN.

J Proteome Res. 2007 May;6(5):1899-916. Epub 2007 Mar 29.

9.

Using Bayesian multinomial classifier to predict whether a given protein sequence is intrinsically disordered.

Bulashevska A, Eils R.

J Theor Biol. 2008 Oct 21;254(4):799-803. doi: 10.1016/j.jtbi.2008.05.040. Epub 2008 Jun 14.

PMID:
18611404
10.

Length-dependent prediction of protein intrinsic disorder.

Peng K, Radivojac P, Vucetic S, Dunker AK, Obradovic Z.

BMC Bioinformatics. 2006 Apr 17;7:208.

11.

Analysis of molecular recognition features (MoRFs).

Mohan A, Oldfield CJ, Radivojac P, Vacic V, Cortese MS, Dunker AK, Uversky VN.

J Mol Biol. 2006 Oct 6;362(5):1043-59. Epub 2006 Aug 4.

PMID:
16935303
12.

Prediction of protein binding regions in disordered proteins.

Mészáros B, Simon I, Dosztányi Z.

PLoS Comput Biol. 2009 May;5(5):e1000376. doi: 10.1371/journal.pcbi.1000376. Epub 2009 May 1.

13.

Function and structure of inherently disordered proteins.

Dunker AK, Silman I, Uversky VN, Sussman JL.

Curr Opin Struct Biol. 2008 Dec;18(6):756-64. doi: 10.1016/j.sbi.2008.10.002. Epub 2008 Nov 17. Review.

PMID:
18952168
14.

Archaic chaos: intrinsically disordered proteins in Archaea.

Xue B, Williams RW, Oldfield CJ, Dunker AK, Uversky VN.

BMC Syst Biol. 2010 May 28;4 Suppl 1:S1. doi: 10.1186/1752-0509-4-S1-S1.

15.

Natively disordered proteins: functions and predictions.

Romero P, Obradovic Z, Dunker AK.

Appl Bioinformatics. 2004;3(2-3):105-13. Review.

PMID:
15693736
16.

Intrinsically disordered protein.

Dunker AK, Lawson JD, Brown CJ, Williams RM, Romero P, Oh JS, Oldfield CJ, Campen AM, Ratliff CM, Hipps KW, Ausio J, Nissen MS, Reeves R, Kang C, Kissinger CR, Bailey RW, Griswold MD, Chiu W, Garner EC, Obradovic Z.

J Mol Graph Model. 2001;19(1):26-59. Review.

PMID:
11381529
17.

Predicting intrinsic disorder in proteins: an overview.

He B, Wang K, Liu Y, Xue B, Uversky VN, Dunker AK.

Cell Res. 2009 Aug;19(8):929-49. doi: 10.1038/cr.2009.87. Review.

PMID:
19597536
18.

Unfoldomics of human genetic diseases: illustrative examples of ordered and intrinsically disordered members of the human diseasome.

Midic U, Oldfield CJ, Dunker AK, Obradovic Z, Uversky VN.

Protein Pept Lett. 2009;16(12):1533-47. Review.

PMID:
20001916
19.

Protein intrinsic disorder and human papillomaviruses: increased amount of disorder in E6 and E7 oncoproteins from high risk HPVs.

Uversky VN, Roman A, Oldfield CJ, Dunker AK.

J Proteome Res. 2006 Aug;5(8):1829-42.

PMID:
16889404
20.

Disordered binding regions and linear motifs--bridging the gap between two models of molecular recognition.

Mészáros B, Dosztányi Z, Simon I.

PLoS One. 2012;7(10):e46829. doi: 10.1371/journal.pone.0046829. Epub 2012 Oct 3.

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