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Items: 1 to 20 of 72

1.

Unassigned MURF1 of kinetoplastids codes for NADH dehydrogenase subunit 2.

Kannan S, Burger G.

BMC Genomics. 2008 Oct 2;9:455. doi: 10.1186/1471-2164-9-455.

2.

URF6, last unidentified reading frame of human mtDNA, codes for an NADH dehydrogenase subunit.

Chomyn A, Cleeter MW, Ragan CI, Riley M, Doolittle RF, Attardi G.

Science. 1986 Oct 31;234(4776):614-8.

PMID:
3764430
3.

HMMEditor: a visual editing tool for profile hidden Markov model.

Dai J, Cheng J.

BMC Genomics. 2008;9 Suppl 1:S8. doi: 10.1186/1471-2164-9-S1-S8.

4.

MMM-QSAR recognition of ribonucleases without alignment: comparison with an HMM model and isolation from Schizosaccharomyces pombe, prediction, and experimental assay of a new sequence.

Agüero-Chapín G, Gonzalez-Díaz H, de la Riva G, Rodríguez E, Sanchez-Rodríguez A, Podda G, Vazquez-Padrón RI.

J Chem Inf Model. 2008 Feb;48(2):434-48. doi: 10.1021/ci7003225. Epub 2008 Feb 7.

PMID:
18254616
5.

Profile hidden Markov models.

Eddy SR.

Bioinformatics. 1998;14(9):755-63. Review.

PMID:
9918945
6.

Hidden Markov model analysis of motifs in steroid dehydrogenases and their homologs.

Grundy WN, Bailey TL, Elkan CP, Baker ME.

Biochem Biophys Res Commun. 1997 Feb 24;231(3):760-6.

PMID:
9070888
7.

[Cloning and characterization of mitochondrial NADH dehydrogenase gene of Cysticercus cellulosae].

Zhang L, Liu DW.

Zhongguo Ji Sheng Chong Xue Yu Ji Sheng Chong Bing Za Zhi. 2003;21(1):34-6. Chinese.

PMID:
12884591
8.

Function prediction of hypothetical proteins without sequence similarity to proteins of known function.

Kannan S, Hauth AM, Burger G.

Protein Pept Lett. 2008;15(10):1107-16.

PMID:
19075823
9.

Enhancing the quality of phylogenetic analysis using fuzzy hidden Markov model alignments.

Collyda C, Diplaris S, Mitkas P, Maglaveras N, Pappas C.

Stud Health Technol Inform. 2007;129(Pt 2):1245-9.

PMID:
17911914
10.

Computational methods for protein sequence comparison and search.

Xu D.

Curr Protoc Protein Sci. 2009 Apr;Chapter 2:Unit2.1. doi: 10.1002/0471140864.ps0201s56.

PMID:
19365790
11.

A mitochondrial protein affects cell morphology, mitochondrial segregation and virulence in Leishmania.

Uboldi AD, Lueder FB, Walsh P, Spurck T, McFadden GI, Curtis J, Likic VA, Perugini MA, Barson M, Lithgow T, Handman E.

Int J Parasitol. 2006 Dec;36(14):1499-514. Epub 2006 Sep 15.

PMID:
17011565
12.

High speed biological sequence analysis with hidden Markov models on reconfigurable platforms.

Oliver TF, Schmidt B, Jakop Y, Maskell DL.

IEEE Trans Inf Technol Biomed. 2009 Sep;13(5):740-6. doi: 10.1109/TITB.2007.904632. Epub 2008 Jun 10.

PMID:
19273034
13.

Predicting conserved protein motifs with Sub-HMMs.

Horan K, Shelton CR, Girke T.

BMC Bioinformatics. 2010 Apr 26;11:205. doi: 10.1186/1471-2105-11-205.

14.

Fuzzy Hidden Markov Models: a new approach in multiple sequence alignment.

Collyda C, Diplaris S, Mitkas PA, Maglaveras N, Pappas C.

Stud Health Technol Inform. 2006;124:99-104.

PMID:
17108510
15.

Enhanced protein fold recognition using a structural alphabet.

Deschavanne P, Tufféry P.

Proteins. 2009 Jul;76(1):129-37. doi: 10.1002/prot.22324.

PMID:
19089985
16.

Characterization of the NADH:ubiquinone oxidoreductase (complex I) in the trypanosomatid Phytomonas serpens (Kinetoplastida).

Cermáková P, Verner Z, Man P, Lukes J, Horváth A.

FEBS J. 2007 Jun;274(12):3150-8. Epub 2007 May 22.

17.

Similarity/dissimilarity studies of protein sequences based on a new 2D graphical representation.

Yao YH, Dai Q, Li L, Nan XY, He PA, Zhang YZ.

J Comput Chem. 2010 Apr 15;31(5):1045-52. doi: 10.1002/jcc.21391.

PMID:
19777597
18.

UFO: a web server for ultra-fast functional profiling of whole genome protein sequences.

Meinicke P.

BMC Genomics. 2009 Sep 2;10:409. doi: 10.1186/1471-2164-10-409.

19.

Classification of the short-chain dehydrogenase/reductase superfamily using hidden Markov models.

Kallberg Y, Oppermann U, Persson B.

FEBS J. 2010 May;277(10):2375-86. doi: 10.1111/j.1742-4658.2010.07656.x.

20.

In silico analysis of methyltransferase domains involved in biosynthesis of secondary metabolites.

Ansari MZ, Sharma J, Gokhale RS, Mohanty D.

BMC Bioinformatics. 2008 Oct 25;9:454. doi: 10.1186/1471-2105-9-454.

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