Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 96

1.

Quality assessment parameters for EST-derived SNPs from catfish.

Wang S, Sha Z, Sonstegard TS, Liu H, Xu P, Somridhivej B, Peatman E, Kucuktas H, Liu Z.

BMC Genomics. 2008 Sep 30;9:450. doi: 10.1186/1471-2164-9-450.

2.

Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies.

Wang S, Peatman E, Abernathy J, Waldbieser G, Lindquist E, Richardson P, Lucas S, Wang M, Li P, Thimmapuram J, Liu L, Vullaganti D, Kucuktas H, Murdock C, Small BC, Wilson M, Liu H, Jiang Y, Lee Y, Chen F, Lu J, Wang W, Xu P, Somridhivej B, Baoprasertkul P, Quilang J, Sha Z, Bao B, Wang Y, Wang Q, Takano T, Nandi S, Liu S, Wong L, Kaltenboeck L, Quiniou S, Bengten E, Miller N, Trant J, Rokhsar D, Liu Z; Catfish Genome Consortium.

Genome Biol. 2010 Jan 22;11(1):R8. doi: 10.1186/gb-2010-11-1-r8.

3.

Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP array.

Liu S, Zhou Z, Lu J, Sun F, Wang S, Liu H, Jiang Y, Kucuktas H, Kaltenboeck L, Peatman E, Liu Z.

BMC Genomics. 2011 Jan 21;12:53. doi: 10.1186/1471-2164-12-53.

4.

Development and characterisation of an expressed sequence tags (EST)-derived single nucleotide polymorphisms (SNPs) resource in rainbow trout.

Boussaha M, Guyomard R, Cabau C, Esquerré D, Quillet E.

BMC Genomics. 2012 Jun 13;13:238. doi: 10.1186/1471-2164-13-238.

5.

Development of EST derived SSRs and SNPs as a genomic resource in Indian catfish, Clarias batrachus.

Mohindra V, Singh A, Barman AS, Tripathi R, Sood N, Lal KK.

Mol Biol Rep. 2012 May;39(5):5921-31. doi: 10.1007/s11033-011-1404-z. Epub 2011 Dec 30.

PMID:
22207175
6.

The first set of EST resource for gene discovery and marker development in pigeonpea (Cajanus cajan L.).

Raju NL, Gnanesh BN, Lekha P, Jayashree B, Pande S, Hiremath PJ, Byregowda M, Singh NK, Varshney RK.

BMC Plant Biol. 2010 Mar 11;10:45. doi: 10.1186/1471-2229-10-45.

7.

ConservedPrimers 2.0: a high-throughput pipeline for comparative genome referenced intron-flanking PCR primer design and its application in wheat SNP discovery.

You FM, Huo N, Gu YQ, Lazo GR, Dvorak J, Anderson OD.

BMC Bioinformatics. 2009 Oct 13;10:331. doi: 10.1186/1471-2105-10-331.

9.

Mining of haplotype-based expressed sequence tag single nucleotide polymorphisms in citrus.

Chen C, Gmitter FG Jr.

BMC Genomics. 2013 Nov 1;14:746. doi: 10.1186/1471-2164-14-746.

10.

The development and characterization of a 60K SNP chip for chicken.

Groenen MA, Megens HJ, Zare Y, Warren WC, Hillier LW, Crooijmans RP, Vereijken A, Okimoto R, Muir WM, Cheng HH.

BMC Genomics. 2011 May 31;12(1):274. doi: 10.1186/1471-2164-12-274.

11.

Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos).

Kraus RH, Kerstens HH, Van Hooft P, Crooijmans RP, Van Der Poel JJ, Elmberg J, Vignal A, Huang Y, Li N, Prins HH, Groenen MA.

BMC Genomics. 2011 Mar 16;12:150. doi: 10.1186/1471-2164-12-150.

12.

QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species.

Tang J, Vosman B, Voorrips RE, van der Linden CG, Leunissen JA.

BMC Bioinformatics. 2006 Oct 9;7:438.

13.

Towards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs.

Li P, Peatman E, Wang S, Feng J, He C, Baoprasertkul P, Xu P, Kucuktas H, Nandi S, Somridhivej B, Serapion J, Simmons M, Turan C, Liu L, Muir W, Dunham R, Brady Y, Grizzle J, Liu Z.

BMC Genomics. 2007 Jun 18;8:177.

14.

Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey.

Kerstens HH, Crooijmans RP, Veenendaal A, Dibbits BW, Chin-A-Woeng TF, den Dunnen JT, Groenen MA.

BMC Genomics. 2009 Oct 16;10:479. doi: 10.1186/1471-2164-10-479.

15.

Generation and analysis of ESTs from the eastern oyster, Crassostrea virginica Gmelin and identification of microsatellite and SNP markers.

Quilang J, Wang S, Li P, Abernathy J, Peatman E, Wang Y, Wang L, Shi Y, Wallace R, Guo X, Liu Z.

BMC Genomics. 2007 Jun 8;8:157.

16.

High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology.

Lijavetzky D, Cabezas JA, Ibáñez A, Rodríguez V, Martínez-Zapater JM.

BMC Genomics. 2007 Nov 19;8:424.

17.

Automated SNP detection in expressed sequence tags: statistical considerations and application to maritime pine sequences.

Dantec LL, Chagné D, Pot D, Cantin O, Garnier-Géré P, Bedon F, Frigerio JM, Chaumeil P, Léger P, Garcia V, Laigret F, De Daruvar A, Plomion C.

Plant Mol Biol. 2004 Feb;54(3):461-70.

PMID:
15284499
18.

Using mtDNA sequences to estimate SNP parameters in ESTs.

Reed KM.

Anim Biotechnol. 2008;19(3):166-77. doi: 10.1080/10495390802170916.

PMID:
18607789
19.

In vitro vs in silico detected SNPs for the development of a genotyping array: what can we learn from a non-model species?

Lepoittevin C, Frigerio JM, Garnier-Géré P, Salin F, Cervera MT, Vornam B, Harvengt L, Plomion C.

PLoS One. 2010 Jun 9;5(6):e11034. doi: 10.1371/journal.pone.0011034.

20.

Mining single-nucleotide polymorphisms from hexaploid wheat ESTs.

Somers DJ, Kirkpatrick R, Moniwa M, Walsh A.

Genome. 2003 Jun;46(3):431-7.

PMID:
12834059

Supplemental Content

Support Center