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Items: 1 to 20 of 101

1.

Proteomics-inferred genome typing (PIGT) demonstrates inter-population recombination as a strategy for environmental adaptation.

Denef VJ, VerBerkmoes NC, Shah MB, Abraham P, Lefsrud M, Hettich RL, Banfield JF.

Environ Microbiol. 2009 Feb;11(2):313-25. doi: 10.1111/j.1462-2920.2008.01769.x. Epub 2008 Sep 23.

PMID:
18826438
2.

Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria.

Lo I, Denef VJ, Verberkmoes NC, Shah MB, Goltsman D, DiBartolo G, Tyson GW, Allen EE, Ram RJ, Detter JC, Richardson P, Thelen MP, Hettich RL, Banfield JF.

Nature. 2007 Mar 29;446(7135):537-41. Epub 2007 Mar 7.

PMID:
17344860
3.

Community genomic and proteomic analyses of chemoautotrophic iron-oxidizing "Leptospirillum rubarum" (Group II) and "Leptospirillum ferrodiazotrophum" (Group III) bacteria in acid mine drainage biofilms.

Goltsman DS, Denef VJ, Singer SW, VerBerkmoes NC, Lefsrud M, Mueller RS, Dick GJ, Sun CL, Wheeler KE, Zemla A, Baker BJ, Hauser L, Land M, Shah MB, Thelen MP, Hettich RL, Banfield JF.

Appl Environ Microbiol. 2009 Jul;75(13):4599-615. doi: 10.1128/AEM.02943-08. Epub 2009 May 8.

4.

Community structure and metabolism through reconstruction of microbial genomes from the environment.

Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, Richardson PM, Solovyev VV, Rubin EM, Rokhsar DS, Banfield JF.

Nature. 2004 Mar 4;428(6978):37-43. Epub 2004 Feb 1.

PMID:
14961025
5.

Community proteomics of a natural microbial biofilm.

Ram RJ, Verberkmoes NC, Thelen MP, Tyson GW, Baker BJ, Blake RC 2nd, Shah M, Hettich RL, Banfield JF.

Science. 2005 Jun 24;308(5730):1915-20. Epub 2005 May 5.

6.

In situ evolutionary rate measurements show ecological success of recently emerged bacterial hybrids.

Denef VJ, Banfield JF.

Science. 2012 Apr 27;336(6080):462-6. doi: 10.1126/science.1218389.

7.

Population genomic analysis of strain variation in Leptospirillum group II bacteria involved in acid mine drainage formation.

Simmons SL, Dibartolo G, Denef VJ, Goltsman DS, Thelen MP, Banfield JF.

PLoS Biol. 2008 Jul 22;6(7):e177. doi: 10.1371/journal.pbio.0060177.

8.

Genomic patterns of recombination, clonal divergence and environment in marine microbial populations.

Konstantinidis KT, DeLong EF.

ISME J. 2008 Oct;2(10):1052-65. doi: 10.1038/ismej.2008.62. Epub 2008 Jun 26.

PMID:
18580971
9.

Microbial community proteomics: elucidating the catalysts and metabolic mechanisms that drive the Earth's biogeochemical cycles.

Wilmes P, Bond PL.

Curr Opin Microbiol. 2009 Jun;12(3):310-7. doi: 10.1016/j.mib.2009.03.004. Epub 2009 May 4. Review.

PMID:
19414280
10.

Cultivation and quantitative proteomic analyses of acidophilic microbial communities.

Belnap CP, Pan C, VerBerkmoes NC, Power ME, Samatova NF, Carver RL, Hettich RL, Banfield JF.

ISME J. 2010 Apr;4(4):520-30. doi: 10.1038/ismej.2009.139. Epub 2009 Dec 24.

PMID:
20033068
11.

Virus population dynamics and acquired virus resistance in natural microbial communities.

Andersson AF, Banfield JF.

Science. 2008 May 23;320(5879):1047-50. doi: 10.1126/science.1157358.

12.

Natural acidophilic biofilm communities reflect distinct organismal and functional organization.

Wilmes P, Remis JP, Hwang M, Auer M, Thelen MP, Banfield JF.

ISME J. 2009 Feb;3(2):266-70. doi: 10.1038/ismej.2008.90. Epub 2008 Oct 9.

PMID:
18843299
13.

Proteogenomic basis for ecological divergence of closely related bacteria in natural acidophilic microbial communities.

Denef VJ, Kalnejais LH, Mueller RS, Wilmes P, Baker BJ, Thomas BC, VerBerkmoes NC, Hettich RL, Banfield JF.

Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2383-90. doi: 10.1073/pnas.0907041107. Epub 2010 Feb 2.

14.

AMD biofilms: using model communities to study microbial evolution and ecological complexity in nature.

Denef VJ, Mueller RS, Banfield JF.

ISME J. 2010 May;4(5):599-610. doi: 10.1038/ismej.2009.158. Epub 2010 Feb 18.

PMID:
20164865
15.

Environmental proteomics: applications of proteome profiling in environmental microbiology and biotechnology.

Lacerda CM, Reardon KF.

Brief Funct Genomic Proteomic. 2009 Jan;8(1):75-87. doi: 10.1093/bfgp/elp005. Epub 2009 Mar 11. Review.

PMID:
19279070
16.

Genome dynamics in a natural archaeal population.

Allen EE, Tyson GW, Whitaker RJ, Detter JC, Richardson PM, Banfield JF.

Proc Natl Acad Sci U S A. 2007 Feb 6;104(6):1883-8. Epub 2007 Jan 31.

17.

Exploring the concept of clonality in bacteria.

Spratt BG.

Methods Mol Biol. 2004;266:323-52. Review.

PMID:
15148426
18.

Posttranslational modification and sequence variation of redox-active proteins correlate with biofilm life cycle in natural microbial communities.

Singer SW, Erickson BK, VerBerkmoes NC, Hwang M, Shah MB, Hettich RL, Banfield JF, Thelen MP.

ISME J. 2010 Nov;4(11):1398-409. doi: 10.1038/ismej.2010.64. Epub 2010 May 20.

PMID:
20485387
19.

Community proteogenomics highlights microbial strain-variant protein expression within activated sludge performing enhanced biological phosphorus removal.

Wilmes P, Andersson AF, Lefsrud MG, Wexler M, Shah M, Zhang B, Hettich RL, Bond PL, VerBerkmoes NC, Banfield JF.

ISME J. 2008 Aug;2(8):853-64. doi: 10.1038/ismej.2008.38. Epub 2008 May 1.

PMID:
18449217
20.

Association of virulence plasmid and antibiotic resistance determinants with chromosomal multilocus genotypes in Mexican Salmonella enterica serovar Typhimurium strains.

Wiesner M, Zaidi MB, Calva E, Fernández-Mora M, Calva JJ, Silva C.

BMC Microbiol. 2009 Jul 3;9:131. doi: 10.1186/1471-2180-9-131.

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