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Items: 1 to 20 of 120

1.

The collaboratory for MS3D: a new cyberinfrastructure for the structural elucidation of biological macromolecules and their assemblies using mass spectrometry-based approaches.

Yu ET, Hawkins A, Kuntz ID, Rahn LA, Rothfuss A, Sale K, Young MM, Yang CL, Pancerella CM, Fabris D.

J Proteome Res. 2008 Nov;7(11):4848-57. doi: 10.1021/pr800443f. Epub 2008 Sep 26.

2.

Biowep: a workflow enactment portal for bioinformatics applications.

Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S19.

3.

A national human neuroimaging collaboratory enabled by the Biomedical Informatics Research Network (BIRN).

Keator DB, Grethe JS, Marcus D, Ozyurt B, Gadde S, Murphy S, Pieper S, Greve D, Notestine R, Bockholt HJ, Papadopoulos P; BIRN Function.; BIRN Morphometry.; BIRN-Coordinating..

IEEE Trans Inf Technol Biomed. 2008 Mar;12(2):162-72. doi: 10.1109/TITB.2008.917893.

4.

Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group.

Mooney SD, Baenziger PH.

Brief Bioinform. 2008 Jan;9(1):69-74. Epub 2007 Dec 5. Review.

PMID:
18057072
5.

Using the iPlant collaborative discovery environment.

Oliver SL, Lenards AJ, Barthelson RA, Merchant N, McKay SJ.

Curr Protoc Bioinformatics. 2013 Jun;Chapter 1:Unit1.22. doi: 10.1002/0471250953.bi0122s42.

PMID:
23749752
6.

LabKey Server: an open source platform for scientific data integration, analysis and collaboration.

Nelson EK, Piehler B, Eckels J, Rauch A, Bellew M, Hussey P, Ramsay S, Nathe C, Lum K, Krouse K, Stearns D, Connolly B, Skillman T, Igra M.

BMC Bioinformatics. 2011 Mar 9;12:71. doi: 10.1186/1471-2105-12-71.

7.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

8.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

9.

Bioinformatics tools for the structural elucidation of multi-subunit protein complexes by mass spectrometric analysis of protein-protein cross-links.

Mayne SL, Patterton HG.

Brief Bioinform. 2011 Nov;12(6):660-71. doi: 10.1093/bib/bbq087. Epub 2011 Jan 18.

PMID:
22101029
10.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

11.

Building biomedical web communities using a semantically aware content management system.

Das S, Girard L, Green T, Weitzman L, Lewis-Bowen A, Clark T.

Brief Bioinform. 2009 Mar;10(2):129-38. doi: 10.1093/bib/bbn052. Epub 2008 Dec 6.

PMID:
19060302
12.

Automation of in-silico data analysis processes through workflow management systems.

Romano P.

Brief Bioinform. 2008 Jan;9(1):57-68. Epub 2007 Dec 2. Review.

PMID:
18056132
13.
14.

Biological data integration using Semantic Web technologies.

Pasquier C.

Biochimie. 2008 Apr;90(4):584-94. doi: 10.1016/j.biochi.2008.02.007. Epub 2008 Feb 21.

PMID:
18294970
15.

Application description and policy model in collaborative environment for sharing of information on epidemiological and clinical research data sets.

de Carvalho EC, Batilana AP, Simkins J, Martins H, Shah J, Rajgor D, Shah A, Rockart S, Pietrobon R.

PLoS One. 2010 Feb 19;5(2):e9314. doi: 10.1371/journal.pone.0009314.

16.

CompPhy: a web-based collaborative platform for comparing phylogenies.

Fiorini N, Lefort V, Chevenet F, Berry V, Chifolleau AM.

BMC Evol Biol. 2014 Dec 14;14:253. doi: 10.1186/s12862-014-0253-5.

17.

caGrid 1.0: an enterprise Grid infrastructure for biomedical research.

Oster S, Langella S, Hastings S, Ervin D, Madduri R, Phillips J, Kurc T, Siebenlist F, Covitz P, Shanbhag K, Foster I, Saltz J.

J Am Med Inform Assoc. 2008 Mar-Apr;15(2):138-49. Epub 2007 Dec 20.

18.

Evolution of web services in bioinformatics.

Neerincx PB, Leunissen JA.

Brief Bioinform. 2005 Jun;6(2):178-88. Review.

PMID:
15975226
19.

Columba: an integrated database of proteins, structures, and annotations.

Trissl S, Rother K, Müller H, Steinke T, Koch I, Preissner R, Frömmel C, Leser U.

BMC Bioinformatics. 2005 Mar 31;6:81.

20.

New tools to support collaboration and virtual organizations.

Frame I, Austen KF, Calleja M, Dove MT, White TO, Wilson DJ.

Philos Trans A Math Phys Eng Sci. 2009 Mar 13;367(1890):1051-6. doi: 10.1098/rsta.2008.0193.

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