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Items: 1 to 20 of 33

1.

Functional modules integrating essential cellular functions are predictive of the response of leukaemia cells to DNA damage.

Sameith K, Antczak P, Marston E, Turan N, Maier D, Stankovic T, Falciani F.

Bioinformatics. 2008 Nov 15;24(22):2602-7. doi: 10.1093/bioinformatics/btn489. Epub 2008 Sep 17.

PMID:
18801750
2.

Identifying functional modules using expression profiles and confidence-scored protein interactions.

Ulitsky I, Shamir R.

Bioinformatics. 2009 May 1;25(9):1158-64. doi: 10.1093/bioinformatics/btp118. Epub 2009 Mar 17.

PMID:
19297352
3.

Functional genomics in radiation biology: a gateway to cellular systems-level studies.

Amundson SA.

Radiat Environ Biophys. 2008 Feb;47(1):25-31. Epub 2007 Nov 1. Review.

PMID:
17973116
4.

Molecular mechanisms involved in chemoresistance in paediatric acute lymphoblastic leukaemia.

Stankovic T, Marston E.

Srp Arh Celok Lek. 2008 Mar-Apr;136(3-4):187-92. Review.

5.

Compromised repair of clustered DNA damage in the human acute lymphoblastic leukemia MSH2-deficient NALM-6 cells.

Holt SM, Scemama JL, Panayiotidis MI, Georgakilas AG.

Mutat Res. 2009 Mar 31;674(1-2):123-30. doi: 10.1016/j.mrgentox.2008.09.014. Epub 2008 Oct 7.

PMID:
18955159
6.

Homogeneous decomposition of protein interaction networks: refining the description of intra-modular interactions.

Del Mondo G, Eveillard D, Rusu I.

Bioinformatics. 2009 Apr 1;25(7):926-32. doi: 10.1093/bioinformatics/btp083. Epub 2009 Feb 17.

PMID:
19223451
7.

Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles.

Prieto C, Risueño A, Fontanillo C, De las Rivas J.

PLoS One. 2008;3(12):e3911. doi: 10.1371/journal.pone.0003911. Epub 2008 Dec 15.

8.

Dissecting the DNA damage response using functional genomics approaches in S. cerevisiae.

Davidson MB, Brown GW.

DNA Repair (Amst). 2009 Sep 2;8(9):1110-7. doi: 10.1016/j.dnarep.2009.03.010. Epub 2009 May 23. Review.

PMID:
19464964
9.

Construction of a functional network for common DNA damage responses in Escherichia coli.

Hong J, Ahn JM, Kim BC, Gu MB.

Genomics. 2009 Jun;93(6):514-24. doi: 10.1016/j.ygeno.2009.01.010. Epub 2009 Feb 14. Erratum in: Genomics. 2009 Sep;94(3):217.

10.

A predictive model of the oxygen and heme regulatory network in yeast.

Kundaje A, Xin X, Lan C, Lianoglou S, Zhou M, Zhang L, Leslie C.

PLoS Comput Biol. 2008 Nov;4(11):e1000224. doi: 10.1371/journal.pcbi.1000224. Epub 2008 Nov 14.

11.

Exploring phenotype-associated modules in an oral cavity tumor using an integrated framework.

Sun Z, Luo J, Zhou Y, Luo J, Liu K, Li W.

Bioinformatics. 2009 Mar 15;25(6):795-800. doi: 10.1093/bioinformatics/btp057. Epub 2009 Jan 29.

PMID:
19181684
12.

Bayesian learning of biological pathways on genomic data assimilation.

Yoshida R, Nagasaki M, Yamaguchi R, Imoto S, Miyano S, Higuchi T.

Bioinformatics. 2008 Nov 15;24(22):2592-601. doi: 10.1093/bioinformatics/btn483. Epub 2008 Sep 25.

PMID:
18818216
13.

Degradation of p21CDKN1A after DNA damage is independent of type of lesion, and is not required for DNA repair.

Savio M, Coppa T, Cazzalini O, Perucca P, Necchi D, Nardo T, Stivala LA, Prosperi E.

DNA Repair (Amst). 2009 Jul 4;8(7):778-85. doi: 10.1016/j.dnarep.2009.02.005. Epub 2009 Mar 24.

PMID:
19321391
14.

DNA damage and repair in Alzheimer's disease.

Coppedè F, Migliore L.

Curr Alzheimer Res. 2009 Feb;6(1):36-47. Review.

PMID:
19199873
15.

Matching methods for observational microarray studies.

Heller R, Manduchi E, Small DS.

Bioinformatics. 2009 Apr 1;25(7):904-9. doi: 10.1093/bioinformatics/btn650. Epub 2008 Dec 19.

PMID:
19098026
16.

Animal performance and stress: responses and tolerance limits at different levels of biological organisation.

Kassahn KS, Crozier RH, Pörtner HO, Caley MJ.

Biol Rev Camb Philos Soc. 2009 May;84(2):277-92. doi: 10.1111/j.1469-185X.2008.00073.x. Epub 2009 Mar 11.

PMID:
19344429
17.

p53 controls prostate-derived factor/macrophage inhibitory cytokine/NSAID-activated gene expression in response to cell density, DNA damage and hypoxia through diverse mechanisms.

Kelly JA, Lucia MS, Lambert JR.

Cancer Lett. 2009 May 8;277(1):38-47. doi: 10.1016/j.canlet.2008.11.013. Epub 2008 Dec 18.

PMID:
19100681
18.

Study of oxidative DNA damage in TK6 human lymphoblastoid cells by use of the in vitro micronucleus test: Determination of No-Observed-Effect Levels.

Platel A, Nesslany F, Gervais V, Marzin D.

Mutat Res. 2009 Aug;678(1):30-7. doi: 10.1016/j.mrgentox.2009.06.006. Epub 2009 Jun 24.

PMID:
19559100
19.

MSMAD: a computationally efficient method for the analysis of noisy array CGH data.

Budinska E, Gelnarova E, Schimek MG.

Bioinformatics. 2009 Mar 15;25(6):703-13. doi: 10.1093/bioinformatics/btp022. Epub 2009 Jan 15.

PMID:
19147666
20.

A role for nuclear translocation of tripeptidyl-peptidase II in reactive oxygen species-dependent DNA damage responses.

Preta G, de Klark R, Glas R.

Biochem Biophys Res Commun. 2009 Nov 27;389(4):575-9. doi: 10.1016/j.bbrc.2009.09.021. Epub 2009 Sep 10.

PMID:
19747897

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