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Items: 1 to 20 of 112

1.

Comparative genomics and evolutionary trajectories of viral ATP dependent DNA-packaging systems.

Burroughs AM, Iyer LM, Aravind L.

Genome Dyn. 2007;3:48-65. doi: 10.1159/000107603. Review.

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The DNA translocating ATPase of bacteriophage T4 packaging motor.

Kondabagil KR, Zhang Z, Rao VB.

J Mol Biol. 2006 Nov 3;363(4):786-99. Epub 2006 Aug 25.

PMID:
16987527
5.

The structure of the herpes simplex virus DNA-packaging terminase pUL15 nuclease domain suggests an evolutionary lineage among eukaryotic and prokaryotic viruses.

Selvarajan Sigamani S, Zhao H, Kamau YN, Baines JD, Tang L.

J Virol. 2013 Jun;87(12):7140-8. doi: 10.1128/JVI.00311-13. Epub 2013 Apr 17.

6.

Evolutionary genomics of nucleo-cytoplasmic large DNA viruses.

Iyer LM, Balaji S, Koonin EV, Aravind L.

Virus Res. 2006 Apr;117(1):156-84. Epub 2006 Feb 21. Review.

PMID:
16494962
7.

Revisiting the genome packaging in viruses with lessons from the "Giants".

Chelikani V, Ranjan T, Kondabagil K.

Virology. 2014 Oct;466-467:15-26. doi: 10.1016/j.virol.2014.06.022. Epub 2014 Jul 3. Review.

8.

Portal-large terminase interactions of the bacteriophage T4 DNA packaging machine implicate a molecular lever mechanism for coupling ATPase to DNA translocation.

Hegde S, Padilla-Sanchez V, Draper B, Rao VB.

J Virol. 2012 Apr;86(8):4046-57. doi: 10.1128/JVI.07197-11. Epub 2012 Feb 15.

10.

Structure-Based Mutagenesis of Sulfolobus Turreted Icosahedral Virus B204 Reveals Essential Residues in the Virion-Associated DNA-Packaging ATPase.

Dellas N, Snyder JC, Dills M, Nicolay SJ, Kerchner KM, Brumfield SK, Lawrence CM, Young MJ.

J Virol. 2015 Dec 23;90(6):2729-39. doi: 10.1128/JVI.02435-15.

11.

Functional identification of the DNA packaging terminase from Pseudomonas aeruginosa phage PaP3.

Shen X, Li M, Zeng Y, Hu X, Tan Y, Rao X, Jin X, Li S, Zhu J, Zhang K, Hu F.

Arch Virol. 2012 Nov;157(11):2133-41. doi: 10.1007/s00705-012-1409-5. Epub 2012 Jul 22.

12.

Bacteriophage lambda terminase: alterations of the high-affinity ATPase affect viral DNA packaging.

Dhar A, Feiss M.

J Mol Biol. 2005 Mar 18;347(1):71-80. Epub 2005 Jan 1. Erratum in: J Mol Biol. 2005 Dec 2;354(3):738.

PMID:
15733918
13.

The bacteriophage DNA packaging motor.

Rao VB, Feiss M.

Annu Rev Genet. 2008;42:647-81. doi: 10.1146/annurev.genet.42.110807.091545. Review.

PMID:
18687036
14.

Small terminase couples viral DNA binding to genome-packaging ATPase activity.

Roy A, Bhardwaj A, Datta P, Lander GC, Cingolani G.

Structure. 2012 Aug 8;20(8):1403-13. doi: 10.1016/j.str.2012.05.014. Epub 2012 Jul 5.

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Structures of the phage Sf6 large terminase provide new insights into DNA translocation and cleavage.

Zhao H, Christensen TE, Kamau YN, Tang L.

Proc Natl Acad Sci U S A. 2013 May 14;110(20):8075-80. doi: 10.1073/pnas.1301133110. Epub 2013 Apr 29.

19.

The ATPase domain of the large terminase protein, gp17, from bacteriophage T4 binds DNA: implications to the DNA packaging mechanism.

Alam TI, Rao VB.

J Mol Biol. 2008 Mar 7;376(5):1272-81. doi: 10.1016/j.jmb.2007.12.041. Epub 2007 Dec 28.

PMID:
18234214
20.

The nuclease domain of the SPP1 packaging motor coordinates DNA cleavage and encapsidation.

Cornilleau C, Atmane N, Jacquet E, Smits C, Alonso JC, Tavares P, Oliveira L.

Nucleic Acids Res. 2013 Jan 7;41(1):340-54. doi: 10.1093/nar/gks974. Epub 2012 Oct 30.

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