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Items: 1 to 20 of 83

1.

"Reverse ecology" and the power of population genomics.

Li YF, Costello JC, Holloway AK, Hahn MW.

Evolution. 2008 Dec;62(12):2984-94. doi: 10.1111/j.1558-5646.2008.00486.x. Epub 2008 Aug 26.

2.

Genomic resources and their influence on the detection of the signal of positive selection in genome scans.

Manel S, Perrier C, Pratlong M, Abi-Rached L, Paganini J, Pontarotti P, Aurelle D.

Mol Ecol. 2016 Jan;25(1):170-84. doi: 10.1111/mec.13468. Epub 2015 Dec 17. Review.

PMID:
26562485
3.

Comparative genomics and the study of evolution by natural selection.

Ellegren H.

Mol Ecol. 2008 Nov;17(21):4586-96. doi: 10.1111/j.1365-294X.2008.03954.x. Review.

PMID:
19140982
4.

An investigation of the statistical power of neutrality tests based on comparative and population genetic data.

Zhai W, Nielsen R, Slatkin M.

Mol Biol Evol. 2009 Feb;26(2):273-83. doi: 10.1093/molbev/msn231. Epub 2008 Oct 14.

5.

The influence of demography and weak selection on the McDonald-Kreitman test: an empirical study in Drosophila.

Parsch J, Zhang Z, Baines JF.

Mol Biol Evol. 2009 Mar;26(3):691-8. doi: 10.1093/molbev/msn297. Epub 2009 Jan 6.

PMID:
19126864
6.

Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Accurate inference and estimation in population genomics.

Hahn MW; SMBE Tri-National Young Investigators..

Mol Biol Evol. 2006 May;23(5):911-8. Epub 2006 Jan 11.

PMID:
16407459
7.

Controlling false discoveries in genome scans for selection.

François O, Martins H, Caye K, Schoville SD.

Mol Ecol. 2016 Jan;25(2):454-69. doi: 10.1111/mec.13513. Epub 2016 Jan 18. Review.

PMID:
26671840
8.

Molecular Population Genetics.

Casillas S, Barbadilla A.

Genetics. 2017 Mar;205(3):1003-1035. doi: 10.1534/genetics.116.196493. Review.

9.

Comparative genomics of Drosophila mtDNA: Novel features of conservation and change across functional domains and lineages.

Montooth KL, Abt DN, Hofmann JW, Rand DM.

J Mol Evol. 2009 Jul;69(1):94-114. doi: 10.1007/s00239-009-9255-0. Epub 2009 Jun 16.

10.

SnIPRE: selection inference using a Poisson random effects model.

Eilertson KE, Booth JG, Bustamante CD.

PLoS Comput Biol. 2012;8(12):e1002806. doi: 10.1371/journal.pcbi.1002806. Epub 2012 Dec 6.

11.

Confounding between recombination and selection, and the Ped/Pop method for detecting selection.

O'Reilly PF, Birney E, Balding DJ.

Genome Res. 2008 Aug;18(8):1304-13. doi: 10.1101/gr.067181.107. Epub 2008 Jul 10.

12.

Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data.

Duforet-Frebourg N, Luu K, Laval G, Bazin E, Blum MG.

Mol Biol Evol. 2016 Apr;33(4):1082-93. doi: 10.1093/molbev/msv334. Epub 2015 Dec 29.

13.

A spatial analysis method (SAM) to detect candidate loci for selection: towards a landscape genomics approach to adaptation.

Joost S, Bonin A, Bruford MW, Després L, Conord C, Erhardt G, Taberlet P.

Mol Ecol. 2007 Sep;16(18):3955-69.

PMID:
17850556
14.

The genomic rate of adaptive amino acid substitution in Drosophila.

Bierne N, Eyre-Walker A.

Mol Biol Evol. 2004 Jul;21(7):1350-60. Epub 2004 Mar 24.

PMID:
15044594
15.

A composite-likelihood approach for detecting directional selection from DNA sequence data.

Zhu L, Bustamante CD.

Genetics. 2005 Jul;170(3):1411-21. Epub 2005 May 6.

16.

Ecological and evolutionary genomics of Saccharomyces cerevisiae.

Landry CR, Townsend JP, Hartl DL, Cavalieri D.

Mol Ecol. 2006 Mar;15(3):575-91. Review.

PMID:
16499686
17.

Revealing the genetic structure of a trait by sequencing a population under selection.

Parts L, Cubillos FA, Warringer J, Jain K, Salinas F, Bumpstead SJ, Molin M, Zia A, Simpson JT, Quail MA, Moses A, Louis EJ, Durbin R, Liti G.

Genome Res. 2011 Jul;21(7):1131-8. doi: 10.1101/gr.116731.110. Epub 2011 Mar 21.

18.

The molecular signature of selection underlying human adaptations.

Harris EE, Meyer D.

Am J Phys Anthropol. 2006;Suppl 43:89-130. Review.

PMID:
17103426
19.

Population genomics of domestic and wild yeasts.

Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, Davey RP, Roberts IN, Burt A, Koufopanou V, Tsai IJ, Bergman CM, Bensasson D, O'Kelly MJ, van Oudenaarden A, Barton DB, Bailes E, Nguyen AN, Jones M, Quail MA, Goodhead I, Sims S, Smith F, Blomberg A, Durbin R, Louis EJ.

Nature. 2009 Mar 19;458(7236):337-41. doi: 10.1038/nature07743. Epub 2009 Feb 11.

20.

[Advances in detecting positive selection on genome].

Lin K, Li HP.

Yi Chuan. 2009 Sep;31(9):896-902. Review. Chinese.

PMID:
19819842

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