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Items: 1 to 20 of 88

1.

Nucleosome positioning in human HOX gene clusters.

Kharchenko PV, Woo CJ, Tolstorukov MY, Kingston RE, Park PJ.

Genome Res. 2008 Oct;18(10):1554-61. doi: 10.1101/gr.075952.107. Epub 2008 Aug 22.

2.

Dynamic nucleosome organization at hox promoters during zebrafish embryogenesis.

Weicksel SE, Xu J, Sagerström CG.

PLoS One. 2013 May 9;8(5):e63175. doi: 10.1371/journal.pone.0063175. Print 2013.

3.

Weakly positioned nucleosomes enhance the transcriptional competency of chromatin.

Belch Y, Yang J, Liu Y, Malkaram SA, Liu R, Riethoven JJ, Ladunga I.

PLoS One. 2010 Sep 24;5(9):e12984. doi: 10.1371/journal.pone.0012984.

4.

A statistical thermodynamic approach for predicting the sequence-dependent nucleosome positioning along genomes.

Scipioni A, Morosetti S, De Santis P.

Biopolymers. 2009 Dec;91(12):1143-53. doi: 10.1002/bip.21276.

PMID:
19598227
5.

Determinants of nucleosome organization in primary human cells.

Valouev A, Johnson SM, Boyd SD, Smith CL, Fire AZ, Sidow A.

Nature. 2011 May 22;474(7352):516-20. doi: 10.1038/nature10002.

6.

The core histone tail domains contribute to sequence-dependent nucleosome positioning.

Yang Z, Zheng C, Hayes JJ.

J Biol Chem. 2007 Mar 16;282(11):7930-8. Epub 2007 Jan 17.

7.

A comparison of nucleosome organization in Drosophila cell lines.

Martin RL, Maiorano J, Beitel GJ, Marko JF, McVicker G, Fondufe-Mittendorf YN.

PLoS One. 2017 Jun 1;12(6):e0178590. doi: 10.1371/journal.pone.0178590. eCollection 2017.

8.

Nucleosome positioning in relation to nucleosome spacing and DNA sequence-specific binding of a protein.

Pusarla RH, Vinayachandran V, Bhargava P.

FEBS J. 2007 May;274(9):2396-410. Epub 2007 Apr 5.

9.

Active nucleosome positioning beyond intrinsic biophysics is revealed by in vitro reconstitution.

Korber P.

Biochem Soc Trans. 2012 Apr;40(2):377-82. doi: 10.1042/BST20110730. Review.

PMID:
22435815
10.

Comparative analysis of H2A.Z nucleosome organization in the human and yeast genomes.

Tolstorukov MY, Kharchenko PV, Goldman JA, Kingston RE, Park PJ.

Genome Res. 2009 Jun;19(6):967-77. doi: 10.1101/gr.084830.108. Epub 2009 Feb 26.

11.

Relating periodicity of nucleosome organization and gene regulation.

Wan J, Lin J, Zack DJ, Qian J.

Bioinformatics. 2009 Jul 15;25(14):1782-8. doi: 10.1093/bioinformatics/btp323. Epub 2009 May 15.

12.

Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity.

Small EC, Xi L, Wang JP, Widom J, Licht JD.

Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):E2462-71. doi: 10.1073/pnas.1400517111. Epub 2014 Jun 2.

13.

Nucleosome positioning signals in the DNA sequence of the human and mouse H19 imprinting control regions.

Davey C, Fraser R, Smolle M, Simmen MW, Allan J.

J Mol Biol. 2003 Jan 31;325(5):873-87.

PMID:
12527297
14.

Nucleosome organization in the vicinity of transcription factor binding sites in the human genome.

Nie Y, Cheng X, Chen J, Sun X.

BMC Genomics. 2014 Jun 19;15:493. doi: 10.1186/1471-2164-15-493.

15.

Genome-wide profiling of nucleosome sensitivity and chromatin accessibility in Drosophila melanogaster.

Chereji RV, Kan TW, Grudniewska MK, Romashchenko AV, Berezikov E, Zhimulev IF, Guryev V, Morozov AV, Moshkin YM.

Nucleic Acids Res. 2016 Feb 18;44(3):1036-51. doi: 10.1093/nar/gkv978. Epub 2015 Oct 1.

16.

Multiple aspects of ATP-dependent nucleosome translocation by RSC and Mi-2 are directed by the underlying DNA sequence.

van Vugt JJ, de Jager M, Murawska M, Brehm A, van Noort J, Logie C.

PLoS One. 2009 Jul 23;4(7):e6345. doi: 10.1371/journal.pone.0006345.

17.

Nucleosome free regions in yeast promoters result from competitive binding of transcription factors that interact with chromatin modifiers.

Ozonov EA, van Nimwegen E.

PLoS Comput Biol. 2013;9(8):e1003181. doi: 10.1371/journal.pcbi.1003181. Epub 2013 Aug 22.

18.

The RSC chromatin remodelling enzyme has a unique role in directing the accurate positioning of nucleosomes.

Wippo CJ, Israel L, Watanabe S, Hochheimer A, Peterson CL, Korber P.

EMBO J. 2011 Apr 6;30(7):1277-88. doi: 10.1038/emboj.2011.43. Epub 2011 Feb 22.

19.

Rules and regulation in the primary structure of chromatin.

Rando OJ, Ahmad K.

Curr Opin Cell Biol. 2007 Jun;19(3):250-6. Epub 2007 Apr 26. Review.

PMID:
17466507
20.

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