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Items: 1 to 20 of 102

1.

MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs.

Hamady M, Widmann J, Copley SD, Knight R.

Genome Biol. 2008;9(8):R128. doi: 10.1186/gb-2008-9-8-r128. Epub 2008 Aug 15.

2.

FunClust: a web server for the identification of structural motifs in a set of non-homologous protein structures.

Ausiello G, Gherardini PF, Marcatili P, Tramontano A, Via A, Helmer-Citterich M.

BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S2. doi: 10.1186/1471-2105-9-S2-S2.

3.

3MOTIF: visualizing conserved protein sequence motifs in the protein structure database.

Bennett SP, Nevill-Manning CG, Brutlag DL.

Bioinformatics. 2003 Mar 1;19(4):541-2.

4.

ProClust: improved clustering of protein sequences with an extended graph-based approach.

Pipenbacher P, Schliep A, Schneckener S, Schönhuth A, Schomburg D, Schrader R.

Bioinformatics. 2002;18 Suppl 2:S182-91.

5.
6.

WebAllergen: a web server for predicting allergenic proteins.

Riaz T, Hor HL, Krishnan A, Tang F, Li KB.

Bioinformatics. 2005 May 15;21(10):2570-1. Epub 2005 Mar 3.

7.

Improved K-means clustering algorithm for exploring local protein sequence motifs representing common structural property.

Zhong W, Altun G, Harrison R, Tai PC, Pan Y.

IEEE Trans Nanobioscience. 2005 Sep;4(3):255-65.

PMID:
16220690
8.

CompariMotif: quick and easy comparisons of sequence motifs.

Edwards RJ, Davey NE, Shields DC.

Bioinformatics. 2008 May 15;24(10):1307-9. doi: 10.1093/bioinformatics/btn105. Epub 2008 Mar 28.

9.

DiffTool: building, visualizing and querying protein clusters.

Chetouani F, Glaser P, Kunst F.

Bioinformatics. 2002 Aug;18(8):1143-4.

10.

MINER: software for phylogenetic motif identification.

La D, Livesay DR.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W267-70.

11.

On the quality of tree-based protein classification.

Lazareva-Ulitsky B, Diemer K, Thomas PD.

Bioinformatics. 2005 May 1;21(9):1876-90. Epub 2005 Jan 12.

12.

SCANMOT: searching for similar sequences using a simultaneous scan of multiple sequence motifs.

Chakrabarti S, Anand AP, Bhardwaj N, Pugalenthi G, Sowdhamini R.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W274-6.

13.
14.

MEME: discovering and analyzing DNA and protein sequence motifs.

Bailey TL, Williams N, Misleh C, Li WW.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W369-73.

15.

NestedMICA as an ab initio protein motif discovery tool.

Doğruel M, Down TA, Hubbard TJ.

BMC Bioinformatics. 2008 Jan 14;9:19. doi: 10.1186/1471-2105-9-19.

16.

SplitTester: software to identify domains responsible for functional divergence in protein family.

Gao X, Vander Velden KA, Voytas DF, Gu X.

BMC Bioinformatics. 2005 Jun 1;6:137.

17.

Multiple Motif Scanning to identify methyltransferases from the yeast proteome.

Petrossian TC, Clarke SG.

Mol Cell Proteomics. 2009 Jul;8(7):1516-26. doi: 10.1074/mcp.M900025-MCP200. Epub 2009 Apr 7.

18.

eBLOCKs: enumerating conserved protein blocks to achieve maximal sensitivity and specificity.

Su QJ, Lu L, Saxonov S, Brutlag DL.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D178-82.

19.

Bellerophon: a program to detect chimeric sequences in multiple sequence alignments.

Huber T, Faulkner G, Hugenholtz P.

Bioinformatics. 2004 Sep 22;20(14):2317-9. Epub 2004 Apr 8.

20.

CREDO: a web-based tool for computational detection of conserved sequence motifs in noncoding sequences.

Hindemitt T, Mayer KF.

Bioinformatics. 2005 Dec 1;21(23):4304-6. Epub 2005 Oct 4.

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