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Items: 1 to 20 of 103

1.

Near-infrared fluorescent oligodeoxyribonucleotide reporters for sensing NF-kappaB DNA interactions in vitro.

Zhang S, Metelev V, Tabatadze D, Zamecnik P, Bogdanov A Jr.

Oligonucleotides. 2008 Sep;18(3):235-43. doi: 10.1089/oli.2008.0135.

2.

Fluorescence resonance energy transfer in near-infrared fluorescent oligonucleotide probes for detecting protein-DNA interactions.

Zhang S, Metelev V, Tabatadze D, Zamecnik PC, Bogdanov A Jr.

Proc Natl Acad Sci U S A. 2008 Mar 18;105(11):4156-61. doi: 10.1073/pnas.0800162105. Epub 2008 Mar 12.

3.

Hairpin-like fluorescent probe for imaging of NF-κB transcription factor activity.

Metelev V, Zhang S, Tabatadze D, Bogdanov A.

Bioconjug Chem. 2011 Apr 20;22(4):759-65. doi: 10.1021/bc100553e. Epub 2011 Mar 21.

4.

Plate capture assay of fluorescent oligonucleotide duplex reporter-transcription factor complexes.

Zhang S, Bogdanov A Jr.

Bioconjug Chem. 2009 Aug 19;20(8):1444-8. doi: 10.1021/bc900137y. Epub 2009 Jul 2.

5.

Sensing of transcription factor binding via cyanine dye pair fluorescence lifetime changes.

Bogdanov AA Jr, Metelev V, Zhang S, Kumar AT.

Mol Biosyst. 2012 Aug;8(8):2166-73. doi: 10.1039/c2mb25057h. Epub 2012 Jun 19.

6.

Synthesis and properties of fluorescent NF-kappa B-recognizing hairpin oligodeoxyribonucleotide decoys.

Metelev V, Weissleder R, Bogdanov A Jr.

Bioconjug Chem. 2004 Nov-Dec;15(6):1481-7.

PMID:
15546218
7.

Sensitive detection of transcription factors by isothermal exponential amplification-based colorimetric assay.

Zhang Y, Hu J, Zhang CY.

Anal Chem. 2012 Nov 6;84(21):9544-9. doi: 10.1021/ac3024087. Epub 2012 Oct 24.

PMID:
23050558
8.

The three-dimensional context of a double helix determines the fluorescence of the internucleoside-tethered pair of fluorophores.

Metelev V, Zhang S, Tabatadze D, Kumar AT, Bogdanov A Jr.

Mol Biosyst. 2013 Oct;9(10):2447-53. doi: 10.1039/c3mb70108e.

9.

Early growth response proteins EGR-4 and EGR-3 interact with immune inflammatory mediators NF-kappaB p50 and p65.

Wieland GD, Nehmann N, Müller D, Eibel H, Siebenlist U, Sühnel J, Zipfel PF, Skerka C.

J Cell Sci. 2005 Jul 15;118(Pt 14):3203-12.

10.

Double plant homeodomain (PHD) finger proteins DPF3a and -3b are required as transcriptional co-activators in SWI/SNF complex-dependent activation of NF-κB RelA/p50 heterodimer.

Ishizaka A, Mizutani T, Kobayashi K, Tando T, Sakurai K, Fujiwara T, Iba H.

J Biol Chem. 2012 Apr 6;287(15):11924-33. doi: 10.1074/jbc.M111.322792. Epub 2012 Feb 13.

11.

DSE-FRET: A new anticancer drug screening assay for DNA binding proteins.

Miyagi T, Shiotani B, Miyoshi R, Yamamoto T, Oka T, Umezawa K, Ochiya T, Takano M, Tahara H.

Cancer Sci. 2014 Jul;105(7):870-4. doi: 10.1111/cas.12420. Epub 2014 May 14.

12.
13.

Cell death in NF-kappaB-dependent tumour cell lines as a result of NF-kappaB trapping by linker-modified hairpin decoy oligonucleotide.

Laguillier C, Hbibi AT, Baran-Marszak F, Metelev V, Cao A, Cymbalista F, Bogdanov A Jr, Fagard R.

FEBS Lett. 2007 Mar 20;581(6):1143-50. Epub 2007 Feb 20.

14.

Resolution of inflammation: prostaglandin E2 dissociates nuclear trafficking of individual NF-kappaB subunits (p65, p50) in stimulated rheumatoid synovial fibroblasts.

Gomez PF, Pillinger MH, Attur M, Marjanovic N, Dave M, Park J, Bingham CO 3rd, Al-Mussawir H, Abramson SB.

J Immunol. 2005 Nov 15;175(10):6924-30.

15.

Interaction of ethyl pyruvate in vitro with NF-κB subunits, RelA and p50.

Mizutani A, Maeda N, Toku S, Higa-Nakamine S, Isohama Y, Sunakawa H, Sugahara K, Yamamoto H.

Eur J Pharmacol. 2011 Jan 10;650(1):151-6. doi: 10.1016/j.ejphar.2010.10.020. Epub 2010 Oct 20.

PMID:
20969857
16.

CpG stimulation of primary mouse B cells is blocked by inhibitory oligodeoxyribonucleotides at a site proximal to NF-kappaB activation.

Lenert P, Stunz L, YI AK, Krieg AM, Ashman RF.

Antisense Nucleic Acid Drug Dev. 2001 Aug;11(4):247-56.

PMID:
11572601
17.

A nonfluorescent, broad-range quencher dye for Förster resonance energy transfer assays.

Peng X, Chen H, Draney DR, Volcheck W, Schutz-Geschwender A, Olive DM.

Anal Biochem. 2009 May 15;388(2):220-8. doi: 10.1016/j.ab.2009.02.024. Epub 2009 Feb 25.

PMID:
19248753
18.

Dynamics of NF kappa B and Ikappa Balpha studied with green fluorescent protein (GFP) fusion proteins. Investigation of GFP-p65 binding to DNa by fluorescence resonance energy transfer.

Schmid JA, Birbach A, Hofer-Warbinek R, Pengg M, Burner U, Furtmüller PG, Binder BR, de Martin R.

J Biol Chem. 2000 Jun 2;275(22):17035-42.

19.

Mechanism of kappa B DNA binding by Rel/NF-kappa B dimers.

Phelps CB, Sengchanthalangsy LL, Malek S, Ghosh G.

J Biol Chem. 2000 Aug 11;275(32):24392-9.

20.

The nuclear I kappaB protein I kappaB zeta specifically binds NF-kappaB p50 homodimers and forms a ternary complex on kappaB DNA.

Trinh DV, Zhu N, Farhang G, Kim BJ, Huxford T.

J Mol Biol. 2008 May 23;379(1):122-35. doi: 10.1016/j.jmb.2008.03.060. Epub 2008 Apr 3.

PMID:
18436238

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