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Items: 1 to 20 of 256

1.

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism.

Nookaew I, Jewett MC, Meechai A, Thammarongtham C, Laoteng K, Cheevadhanarak S, Nielsen J, Bhumiratana S.

BMC Syst Biol. 2008 Aug 7;2:71. doi: 10.1186/1752-0509-2-71.

2.

Integration of gene expression data into genome-scale metabolic models.

Akesson M, Förster J, Nielsen J.

Metab Eng. 2004 Oct;6(4):285-93.

PMID:
15491858
3.

Steady-state and dynamic flux balance analysis of ethanol production by Saccharomyces cerevisiae.

Hjersted JL, Henson MA.

IET Syst Biol. 2009 May;3(3):167-79. doi: 10.1049/iet-syb.2008.0103.

PMID:
19449977
4.

Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks.

Cakir T, Kirdar B, Ulgen KO.

Biotechnol Bioeng. 2004 May 5;86(3):251-60.

PMID:
15083505
5.

Metabolic functions of duplicate genes in Saccharomyces cerevisiae.

Kuepfer L, Sauer U, Blank LM.

Genome Res. 2005 Oct;15(10):1421-30.

6.

Genome-scale metabolic models of Saccharomyces cerevisiae.

Nookaew I, Olivares-Hernández R, Bhumiratana S, Nielsen J.

Methods Mol Biol. 2011;759:445-63. doi: 10.1007/978-1-61779-173-4_25. Review.

PMID:
21863502
7.
8.

Genome-scale reconstruction and in silico analysis of the Clostridium acetobutylicum ATCC 824 metabolic network.

Lee J, Yun H, Feist AM, Palsson BØ, Lee SY.

Appl Microbiol Biotechnol. 2008 Oct;80(5):849-62. doi: 10.1007/s00253-008-1654-4. Epub 2008 Aug 29.

PMID:
18758767
9.

Genome-scale analysis of Mannheimia succiniciproducens metabolism.

Kim TY, Kim HU, Park JM, Song H, Kim JS, Lee SY.

Biotechnol Bioeng. 2007 Jul 1;97(4):657-71.

PMID:
17405177
10.

Mapping condition-dependent regulation of metabolism in yeast through genome-scale modeling.

Österlund T, Nookaew I, Bordel S, Nielsen J.

BMC Syst Biol. 2013 Apr 30;7:36. doi: 10.1186/1752-0509-7-36.

11.

Simulation and validation of modelled sphingolipid metabolism in Saccharomyces cerevisiae.

Alvarez-Vasquez F, Sims KJ, Cowart LA, Okamoto Y, Voit EO, Hannun YA.

Nature. 2005 Jan 27;433(7024):425-30.

PMID:
15674294
12.

A genome-scale metabolic model of the lipid-accumulating yeast Yarrowia lipolytica.

Loira N, Dulermo T, Nicaud JM, Sherman DJ.

BMC Syst Biol. 2012 May 4;6:35. doi: 10.1186/1752-0509-6-35.

13.

A predictive model of the oxygen and heme regulatory network in yeast.

Kundaje A, Xin X, Lan C, Lianoglou S, Zhou M, Zhang L, Leslie C.

PLoS Comput Biol. 2008 Nov;4(11):e1000224. doi: 10.1371/journal.pcbi.1000224. Epub 2008 Nov 14.

14.

Identification of common traits in improved xylose-growing Saccharomyces cerevisiae for inverse metabolic engineering.

Bengtsson O, Jeppsson M, Sonderegger M, Parachin NS, Sauer U, Hahn-Hägerdal B, Gorwa-Grauslund MF.

Yeast. 2008 Nov;25(11):835-47. doi: 10.1002/yea.1638.

15.

Metabolic adaptation after whole genome duplication.

van Hoek MJ, Hogeweg P.

Mol Biol Evol. 2009 Nov;26(11):2441-53. doi: 10.1093/molbev/msp160. Epub 2009 Jul 22.

PMID:
19625390
16.

Large scale deletions in the Saccharomyces cerevisiae genome create strains with altered regulation of carbon metabolism.

Murakami K, Tao E, Ito Y, Sugiyama M, Kaneko Y, Harashima S, Sumiya T, Nakamura A, Nishizawa M.

Appl Microbiol Biotechnol. 2007 Jun;75(3):589-97. Epub 2007 Mar 8.

PMID:
17345083
17.

Genome-scale modeling and in silico analysis of mouse cell metabolic network.

Selvarasu S, Karimi IA, Ghim GH, Lee DY.

Mol Biosyst. 2010 Jan;6(1):152-61. doi: 10.1039/b912865d. Epub 2009 Sep 2.

PMID:
20024077
18.

A network of transcriptionally coordinated functional modules in Saccharomyces cerevisiae.

Petti AA, Church GM.

Genome Res. 2005 Sep;15(9):1298-306. Epub 2005 Aug 18.

19.

New experimental and theoretical tools for metabolic engineering of micro-organisms.

Heijnen JJ.

Meded Rijksuniv Gent Fak Landbouwkd Toegep Biol Wet. 2001;66(3a):11-30.

PMID:
15954559
20.

Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model.

Teusink B, Wiersma A, Molenaar D, Francke C, de Vos WM, Siezen RJ, Smid EJ.

J Biol Chem. 2006 Dec 29;281(52):40041-8. Epub 2006 Oct 24.

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