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Items: 1 to 20 of 111

1.

Comparing the three-dimensional structures of Dicistroviridae IGR IRES RNAs with other viral RNA structures.

Kieft JS.

Virus Res. 2009 Feb;139(2):148-56. doi: 10.1016/j.virusres.2008.07.007. Epub 2008 Aug 15. Review.

2.
3.

Mechanistic role of structurally dynamic regions in Dicistroviridae IGR IRESs.

Pfingsten JS, Castile AE, Kieft JS.

J Mol Biol. 2010 Jan 8;395(1):205-17. doi: 10.1016/j.jmb.2009.10.047. Epub 2009 Oct 28.

4.

Modular domains of the Dicistroviridae intergenic internal ribosome entry site.

Jang CJ, Jan E.

RNA. 2010 Jun;16(6):1182-95. doi: 10.1261/rna.2044610. Epub 2010 Apr 27.

5.

Conservation and diversity among the three-dimensional folds of the Dicistroviridae intergenic region IRESes.

Pfingsten JS, Costantino DA, Kieft JS.

J Mol Biol. 2007 Jul 27;370(5):856-69. Epub 2007 May 8.

6.

Structural basis for ribosome recruitment and manipulation by a viral IRES RNA.

Pfingsten JS, Costantino DA, Kieft JS.

Science. 2006 Dec 1;314(5804):1450-4. Epub 2006 Nov 23.

7.

Functional analysis of structural motifs in dicistroviruses.

Nakashima N, Uchiumi T.

Virus Res. 2009 Feb;139(2):137-47. doi: 10.1016/j.virusres.2008.06.006. Epub 2008 Jul 25. Review.

PMID:
18621089
8.

An atypical IRES within the 5' UTR of a dicistrovirus genome.

Roberts LO, Groppelli E.

Virus Res. 2009 Feb;139(2):157-65. doi: 10.1016/j.virusres.2008.07.017. Epub 2008 Sep 11. Review.

PMID:
18755228
9.

Initiation of translation in bacteria by a structured eukaryotic IRES RNA.

Colussi TM, Costantino DA, Zhu J, Donohue JP, Korostelev AA, Jaafar ZA, Plank TD, Noller HF, Kieft JS.

Nature. 2015 Mar 5;519(7541):110-3. doi: 10.1038/nature14219. Epub 2015 Feb 4.

10.

Conserved element of the dicistrovirus IGR IRES that mimics an E-site tRNA/ribosome interaction mediates multiple functions.

Jang CJ, Lo MC, Jan E.

J Mol Biol. 2009 Mar 20;387(1):42-58. doi: 10.1016/j.jmb.2009.01.042. Epub 2009 Jan 29.

PMID:
19361441
11.

In vivo functional analysis of the Dicistroviridae intergenic region internal ribosome entry sites.

Hertz MI, Thompson SR.

Nucleic Acids Res. 2011 Sep 1;39(16):7276-88. doi: 10.1093/nar/gkr427. Epub 2011 Jun 6.

12.

Eukaryotic ribosomal protein RPS25 interacts with the conserved loop region in a dicistroviral intergenic internal ribosome entry site.

Nishiyama T, Yamamoto H, Uchiumi T, Nakashima N.

Nucleic Acids Res. 2007;35(5):1514-21. Epub 2007 Feb 7.

13.

A dynamic RNA loop in an IRES affects multiple steps of elongation factor-mediated translation initiation.

Ruehle MD, Zhang H, Sheridan RM, Mitra S, Chen Y, Gonzalez RL, Cooperman BS, Kieft JS.

Elife. 2015 Nov 2;4. pii: e08146. doi: 10.7554/eLife.08146.

14.

Structure of the ribosome-bound cricket paralysis virus IRES RNA.

Schüler M, Connell SR, Lescoute A, Giesebrecht J, Dabrowski M, Schroeer B, Mielke T, Penczek PA, Westhof E, Spahn CM.

Nat Struct Mol Biol. 2006 Dec;13(12):1092-6. Epub 2006 Nov 19.

PMID:
17115051
15.
16.

Divergent IRES elements in invertebrates.

Jan E.

Virus Res. 2006 Jul;119(1):16-28. Epub 2005 Nov 22. Review.

PMID:
16307820
17.

Binding mode of the first aminoacyl-tRNA in translation initiation mediated by Plautia stali intestine virus internal ribosome entry site.

Yamamoto H, Nakashima N, Ikeda Y, Uchiumi T.

J Biol Chem. 2007 Mar 16;282(11):7770-6. Epub 2007 Jan 5.

18.

Divergent picornavirus IRES elements.

Belsham GJ.

Virus Res. 2009 Feb;139(2):183-92. doi: 10.1016/j.virusres.2008.07.001. Epub 2008 Aug 20. Review.

PMID:
18675861
19.

The influence of downstream protein-coding sequence on internal ribosome entry on hepatitis C virus and other flavivirus RNAs.

Rijnbrand R, Bredenbeek PJ, Haasnoot PC, Kieft JS, Spaan WJ, Lemon SM.

RNA. 2001 Apr;7(4):585-97.

20.

Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome.

Zhu J, Korostelev A, Costantino DA, Donohue JP, Noller HF, Kieft JS.

Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):1839-44. doi: 10.1073/pnas.1018582108. Epub 2011 Jan 18.

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