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Items: 1 to 20 of 139

1.

SoyXpress: a database for exploring the soybean transcriptome.

Cheng KC, Strömvik MV.

BMC Genomics. 2008 Aug 1;9:368. doi: 10.1186/1471-2164-9-368.

2.

Effect of transgenes on global gene expression in soybean is within the natural range of variation of conventional cultivars.

Cheng KC, Beaulieu J, Iquira E, Belzile FJ, Fortin MG, Strömvik MV.

J Agric Food Chem. 2008 May 14;56(9):3057-67. doi: 10.1021/jf073505i. Epub 2008 Apr 23.

PMID:
18433101
3.

SGMD: the Soybean Genomics and Microarray Database.

Alkharouf NW, Matthews BF.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D398-400.

4.

The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections.

Merelli I, Caprera A, Stella A, Del Corvo M, Milanesi L, Lazzari B.

BMC Bioinformatics. 2009 Oct 15;10 Suppl 12:S2. doi: 10.1186/1471-2105-10-S12-S2.

5.
6.

VitisExpDB: a database resource for grape functional genomics.

Doddapaneni H, Lin H, Walker MA, Yao J, Civerolo EL.

BMC Plant Biol. 2008 Feb 28;8:23. doi: 10.1186/1471-2229-8-23.

7.
8.

EST2uni: an open, parallel tool for automated EST analysis and database creation, with a data mining web interface and microarray expression data integration.

Forment J, Gilabert F, Robles A, Conejero V, Nuez F, Blanca JM.

BMC Bioinformatics. 2008 Jan 7;9:5. doi: 10.1186/1471-2105-9-5.

9.

A genome-wide 20 K citrus microarray for gene expression analysis.

Martinez-Godoy MA, Mauri N, Juarez J, Marques MC, Santiago J, Forment J, Gadea J.

BMC Genomics. 2008 Jul 3;9:318. doi: 10.1186/1471-2164-9-318.

10.

[Transcriptomes for serial analysis of gene expression].

Marti J, Piquemal D, Manchon L, Commes T.

J Soc Biol. 2002;196(4):303-7. Review. French.

PMID:
12645300
11.

Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome.

Kim HJ, Baek KH, Lee SW, Kim J, Lee BW, Cho HS, Kim WT, Choi D, Hur CG.

BMC Plant Biol. 2008 Oct 9;8:101. doi: 10.1186/1471-2229-8-101.

12.

SjTPdb: integrated transcriptome and proteome database and analysis platform for Schistosoma japonicum.

Liu F, Chen P, Cui SJ, Wang ZQ, Han ZG.

BMC Genomics. 2008 Jun 26;9:304. doi: 10.1186/1471-2164-9-304.

13.

Grouping and identification of sequence tags (GRIST): bioinformatics tools for the NEIBank database.

Wistow G, Bernstein SL, Touchman JW, Bouffard G, Wyatt MK, Peterson K, Behal A, Gao J, Buchoff P, Smith D.

Mol Vis. 2002 Jun 15;8:164-70.

14.

MoccaDB - an integrative database for functional, comparative and diversity studies in the Rubiaceae family.

Plechakova O, Tranchant-Dubreuil C, Benedet F, Couderc M, Tinaut A, Viader V, De Block P, Hamon P, Campa C, de Kochko A, Hamon S, Poncet V.

BMC Plant Biol. 2009 Sep 29;9:123. doi: 10.1186/1471-2229-9-123.

15.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

16.

ESTIMA, a tool for EST management in a multi-project environment.

Kumar CG, LeDuc R, Gong G, Roinishivili L, Lewin HA, Liu L.

BMC Bioinformatics. 2004 Nov 4;5:176.

17.

JUICE: a data management system that facilitates the analysis of large volumes of information in an EST project workflow.

Latorre M, Silva H, Saba J, Guziolowski C, Vizoso P, Martinez V, Maldonado J, Morales A, Caroca R, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Retamales J, Meisel LA.

BMC Bioinformatics. 2006 Nov 23;7:513.

18.

Version VI of the ESTree db: an improved tool for peach transcriptome analysis.

Lazzari B, Caprera A, Vecchietti A, Merelli I, Barale F, Milanesi L, Stella A, Pozzi C.

BMC Bioinformatics. 2008 Mar 26;9 Suppl 2:S9. doi: 10.1186/1471-2105-9-S2-S9.

19.

MiCoViTo: a tool for gene-centric comparison and visualization of yeast transcriptome states.

Lelandais G, Marc P, Vincens P, Jacq C, Vialette S.

BMC Bioinformatics. 2004 Mar 3;5:20.

20.

TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources.

Lenzi L, Facchin F, Piva F, Giulietti M, Pelleri MC, Frabetti F, Vitale L, Casadei R, Canaider S, Bortoluzzi S, Coppe A, Danieli GA, Principato G, Ferrari S, Strippoli P.

BMC Genomics. 2011 Feb 18;12:121. doi: 10.1186/1471-2164-12-121.

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