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Items: 1 to 20 of 157

1.

Unexpected complexity of the budding yeast transcriptome.

Ito T, Miura F, Onda M.

IUBMB Life. 2008 Dec;60(12):775-81. doi: 10.1002/iub.121. Review.

2.

A large-scale full-length cDNA analysis to explore the budding yeast transcriptome.

Miura F, Kawaguchi N, Sese J, Toyoda A, Hattori M, Morishita S, Ito T.

Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17846-51. Epub 2006 Nov 13.

3.

Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast.

Nishizawa M, Komai T, Katou Y, Shirahige K, Ito T, Toh-E A.

PLoS Biol. 2008 Dec 23;6(12):2817-30. doi: 10.1371/journal.pbio.0060326.

4.

Exosome complex and pervasive transcription in eukaryotic genomes.

Belostotsky D.

Curr Opin Cell Biol. 2009 Jun;21(3):352-8. doi: 10.1016/j.ceb.2009.04.011. Epub 2009 May 19. Review.

PMID:
19467852
5.

Noncoding RNA transcription beyond annotated genes.

Carninci P, Hayashizaki Y.

Curr Opin Genet Dev. 2007 Apr;17(2):139-44. Epub 2007 Feb 20. Review.

PMID:
17317145
6.

Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway.

Samanta MP, Tongprasit W, Sethi H, Chin CS, Stolc V.

Proc Natl Acad Sci U S A. 2006 Mar 14;103(11):4192-7. Epub 2006 Mar 6.

7.

Genome-wide allele- and strand-specific expression profiling.

Gagneur J, Sinha H, Perocchi F, Bourgon R, Huber W, Steinmetz LM.

Mol Syst Biol. 2009;5:274. doi: 10.1038/msb.2009.31. Epub 2009 Jun 16.

8.

Pervasive transcription - Lessons from yeast.

Tisseur M, Kwapisz M, Morillon A.

Biochimie. 2011 Nov;93(11):1889-96. doi: 10.1016/j.biochi.2011.07.001. Epub 2011 Jul 12. Review.

PMID:
21771634
9.

Intragenic transcription of a noncoding RNA modulates expression of ASP3 in budding yeast.

Huang YC, Chen HT, Teng SC.

RNA. 2010 Nov;16(11):2085-93. doi: 10.1261/rna.2177410. Epub 2010 Sep 3.

10.
11.

Genome-wide transcriptome analysis in yeast using high-density tiling arrays.

David L, Clauder-Münster S, Steinmetz LM.

Methods Mol Biol. 2011;759:107-23. doi: 10.1007/978-1-61779-173-4_7.

PMID:
21863484
12.

Noncoding RNA transcripts.

Szymański M, Barciszewska MZ, Zywicki M, Barciszewski J.

J Appl Genet. 2003;44(1):1-19. Review.

PMID:
12590177
13.

Transcriptome complexity in a genome-reduced bacterium.

Güell M, van Noort V, Yus E, Chen WH, Leigh-Bell J, Michalodimitrakis K, Yamada T, Arumugam M, Doerks T, Kühner S, Rode M, Suyama M, Schmidt S, Gavin AC, Bork P, Serrano L.

Science. 2009 Nov 27;326(5957):1268-71. doi: 10.1126/science.1176951.

14.

Ashbya Genome Database 3.0: a cross-species genome and transcriptome browser for yeast biologists.

Gattiker A, Rischatsch R, Demougin P, Voegeli S, Dietrich FS, Philippsen P, Primig M.

BMC Genomics. 2007 Jan 9;8:9.

15.

A de novo originated gene depresses budding yeast mating pathway and is repressed by the protein encoded by its antisense strand.

Li D, Dong Y, Jiang Y, Jiang H, Cai J, Wang W.

Cell Res. 2010 Apr;20(4):408-20. doi: 10.1038/cr.2010.31. Epub 2010 Mar 2.

PMID:
20195295
16.

Bidirectional promoters generate pervasive transcription in yeast.

Xu Z, Wei W, Gagneur J, Perocchi F, Clauder-Münster S, Camblong J, Guffanti E, Stutz F, Huber W, Steinmetz LM.

Nature. 2009 Feb 19;457(7232):1033-7. doi: 10.1038/nature07728. Epub 2009 Jan 25.

17.

Multifaceted mammalian transcriptome.

Carninci P, Yasuda J, Hayashizaki Y.

Curr Opin Cell Biol. 2008 Jun;20(3):274-80. doi: 10.1016/j.ceb.2008.03.008. Epub 2008 May 28. Review.

PMID:
18468878
18.

Transcriptional interference and gene orientation in yeast: noncoding RNA connections.

Gullerova M, Proudfoot NJ.

Cold Spring Harb Symp Quant Biol. 2010;75:299-311. doi: 10.1101/sqb.2010.75.048. Epub 2011 Apr 5.

PMID:
21467144
19.

Constructing the landscape of the mammalian transcriptome.

Carninci P.

J Exp Biol. 2007 May;210(Pt 9):1497-506.

20.

Pervasive transcription of the eukaryotic genome: functional indices and conceptual implications.

Dinger ME, Amaral PP, Mercer TR, Mattick JS.

Brief Funct Genomic Proteomic. 2009 Nov;8(6):407-23. doi: 10.1093/bfgp/elp038. Epub 2009 Sep 21.

PMID:
19770204

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