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Items: 1 to 20 of 63

1.

iSPOT: a web tool for the analysis and recognition of protein domain specificity.

Brannetti B, Zanzoni A, Montecchi-Palazzi L, Cesareni G, Helmer-Citterich M.

Comp Funct Genomics. 2001;2(5):314-8. doi: 10.1002/cfg.104.

2.

iSPOT: A web tool to infer the interaction specificity of families of protein modules.

Brannetti B, Helmer-Citterich M.

Nucleic Acids Res. 2003 Jul 1;31(13):3709-11.

3.

SH3-SPOT: an algorithm to predict preferred ligands to different members of the SH3 gene family.

Brannetti B, Via A, Cestra G, Cesareni G, Helmer-Citterich M.

J Mol Biol. 2000 Apr 28;298(2):313-28.

PMID:
10764600
4.

Characterization of domain-peptide interaction interface: a case study on the amphiphysin-1 SH3 domain.

Hou T, Zhang W, Case DA, Wang W.

J Mol Biol. 2008 Feb 29;376(4):1201-14. doi: 10.1016/j.jmb.2007.12.054.

PMID:
18206907
5.

Domain Interaction Footprint: a multi-classification approach to predict domain-peptide interactions.

Schillinger C, Boisguerin P, Krause G.

Bioinformatics. 2009 Jul 1;25(13):1632-9. doi: 10.1093/bioinformatics/btp264.

6.

Predicting protein-peptide interactions via a network-based motif sampler.

Reiss DJ, Schwikowski B.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i274-82.

7.

SH3-Hunter: discovery of SH3 domain interaction sites in proteins.

Ferraro E, Peluso D, Via A, Ausiello G, Helmer-Citterich M.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W451-4.

8.

DOMINO: a database of domain-peptide interactions.

Ceol A, Chatr-aryamontri A, Santonico E, Sacco R, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2007 Jan;35(Database issue):D557-60.

9.

Can we infer peptide recognition specificity mediated by SH3 domains?

Cesareni G, Panni S, Nardelli G, Castagnoli L.

FEBS Lett. 2002 Feb 20;513(1):38-44.

10.

Distinct binding specificity of the multiple PDZ domains of INADL, a human protein with homology to INAD from Drosophila melanogaster.

Vaccaro P, Brannetti B, Montecchi-Palazzi L, Philipp S, Helmer Citterich M, Cesareni G, Dente L.

J Biol Chem. 2001 Nov 9;276(45):42122-30.

11.

ProFAT: a web-based tool for the functional annotation of protein sequences.

Bradshaw CR, Surendranath V, Habermann B.

BMC Bioinformatics. 2006 Oct 23;7:466.

12.

The SH3 domain of nebulin binds selectively to type II peptides: theoretical prediction and experimental validation.

Politou AS, Spadaccini R, Joseph C, Brannetti B, Guerrini R, Helmer-Citterich M, Salvadori S, Temussi PA, Pastore A.

J Mol Biol. 2002 Feb 15;316(2):305-15.

PMID:
11851340
13.

Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service.

Kim JG, Park D, Kim BC, Cho SW, Kim YT, Park YJ, Cho HJ, Park H, Kim KB, Yoon KO, Park SJ, Lee BM, Bhak J.

BMC Bioinformatics. 2008 Jan 24;9:41. doi: 10.1186/1471-2105-9-41.

14.
15.

3did Update: domain-domain and peptide-mediated interactions of known 3D structure.

Stein A, Panjkovich A, Aloy P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D300-4. doi: 10.1093/nar/gkn690.

16.

Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening.

Wu C, Ma MH, Brown KR, Geisler M, Li L, Tzeng E, Jia CY, Jurisica I, Li SS.

Proteomics. 2007 Jun;7(11):1775-85.

PMID:
17474147
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19.

AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.

Gewehr JE, Hintermair V, Zimmer R.

Bioinformatics. 2007 May 15;23(10):1203-10.

20.
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