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Items: 1 to 20 of 54

1.

The molecule role ontology: an ontology for annotation of signal transduction pathway molecules in the scientific literature.

Yamamoto S, Asanuma T, Takagi T, Fukuda KI.

Comp Funct Genomics. 2004;5(6-7):528-36. doi: 10.1002/cfg.432.

2.

Event ontology: a pathway-centric ontology for biological processes.

Kushida T, Takagi T, Fukuda KI.

Pac Symp Biocomput. 2006:152-63.

3.

Ontology annotation: mapping genomic regions to biological function.

Thomas PD, Mi H, Lewis S.

Curr Opin Chem Biol. 2007 Feb;11(1):4-11. Epub 2007 Jan 5. Review.

PMID:
17208035
4.
5.

TRANSFAC, TRANSPATH and CYTOMER as starting points for an ontology of regulatory networks.

Wingender E.

In Silico Biol. 2004;4(1):55-61. Epub 2004 Mar 16.

PMID:
15089753
6.

iProLINK: an integrated protein resource for literature mining.

Hu ZZ, Mani I, Hermoso V, Liu H, Wu CH.

Comput Biol Chem. 2004 Dec;28(5-6):409-16.

PMID:
15556482
8.

The application of abstract topology to RAS-related signal transduction pathways.

Cárdenas-García M, Lagunez Otero J, Korneev NA.

In Silico Biol. 2002;2(4):453-60.

PMID:
12611625
9.

A database system for the analysis of biochemical pathways.

Rojas I, Bernardi L, Ratsch E, Kania R, Wittig U, Saric J.

In Silico Biol. 2002;2(2):75-86.

PMID:
12066842
10.
11.

KSR: a MAPK scaffold of the Ras pathway?

Morrison DK.

J Cell Sci. 2001 May;114(Pt 9):1609-12. Review.

12.

Ontology-based knowledge representation for bioinformatics.

Stevens R, Goble CA, Bechhofer S.

Brief Bioinform. 2000 Nov;1(4):398-414. Review.

PMID:
11465057
13.

FREX: a query interface for biological processes with hierarchical and recursive structures.

Fukuda KI, Yamagata Y, Takagi T.

In Silico Biol. 2004;4(1):63-79. Epub 2004 Feb 22.

PMID:
15089754
14.

Concept-based annotation of enzyme classes.

Hofmann O, Schomburg D.

Bioinformatics. 2005 May 1;21(9):2059-66. Epub 2005 Jan 20.

PMID:
15661799
15.

Single-molecule imaging analysis of Ras activation in living cells.

Murakoshi H, Iino R, Kobayashi T, Fujiwara T, Ohshima C, Yoshimura A, Kusumi A.

Proc Natl Acad Sci U S A. 2004 May 11;101(19):7317-22. Epub 2004 Apr 29.

16.

IMGT-Kaleidoscope, the formal IMGT-ONTOLOGY paradigm.

Duroux P, Kaas Q, Brochet X, Lane J, Ginestoux C, Lefranc MP, Giudicelli V.

Biochimie. 2008 Apr;90(4):570-83. Epub 2007 Sep 11.

PMID:
17949886
17.

A literature-based similarity metric for biological processes.

Chagoyen M, Carmona-Saez P, Gil C, Carazo JM, Pascual-Montano A.

BMC Bioinformatics. 2006 Jul 26;7:363.

18.

Protein interaction data set highlighted with human Ras-MAPK/PI3K signaling pathways.

Wang J, Yuan Y, Zhou Y, Guo L, Zhang L, Kuai X, Deng B, Pan Z, Li D, He F.

J Proteome Res. 2008 Sep;7(9):3879-89. doi: 10.1021/pr8001645. Epub 2008 Jul 15.

PMID:
18624398
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20.

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