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Items: 1 to 20 of 57

1.

The prediction of membrane protein structure and genome structural annotation.

Martelli PL, Fariselli P, Tasco G, Casadio R.

Comp Funct Genomics. 2003;4(4):406-9. doi: 10.1002/cfg.308.

2.

A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins.

Bagos PG, Liakopoulos TD, Spyropoulos IC, Hamodrakas SJ.

BMC Bioinformatics. 2004 Mar 15;5:29.

3.

Scoring hidden Markov models to discriminate beta-barrel membrane proteins.

Deng Y, Liu Q, Li YX.

Comput Biol Chem. 2004 Jul;28(3):189-94.

PMID:
15261149
4.

A HMM-based method to predict the transmembrane regions of beta-barrel membrane proteins.

Liu Q, Zhu YS, Wang BH, Li YX.

Comput Biol Chem. 2003 Feb;27(1):69-76.

PMID:
12798041
5.

Prediction of the disulfide bonding state of cysteines in proteins with hidden neural networks.

Martelli PL, Fariselli P, Malaguti L, Casadio R.

Protein Eng. 2002 Dec;15(12):951-3.

6.
7.

PROFtmb: a web server for predicting bacterial transmembrane beta barrel proteins.

Bigelow H, Rost B.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W186-8.

8.

Hidden Markov models in computational biology. Applications to protein modeling.

Krogh A, Brown M, Mian IS, Sjölander K, Haussler D.

J Mol Biol. 1994 Feb 4;235(5):1501-31.

PMID:
8107089
9.

Prediction of lipoprotein signal peptides in Gram-negative bacteria.

Juncker AS, Willenbrock H, Von Heijne G, Brunak S, Nielsen H, Krogh A.

Protein Sci. 2003 Aug;12(8):1652-62.

10.

Triage protein fold prediction.

He H, McAllister G, Smith TF.

Proteins. 2002 Sep 1;48(4):654-63.

PMID:
12211033
11.

transFold: a web server for predicting the structure and residue contacts of transmembrane beta-barrels.

Waldispühl J, Berger B, Clote P, Steyaert JM.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W189-93.

14.

Hidden Markov models for detecting remote protein homologies.

Karplus K, Barrett C, Hughey R.

Bioinformatics. 1998;14(10):846-56.

15.

Prediction of mitochondrial proteins using support vector machine and hidden Markov model.

Kumar M, Verma R, Raghava GP.

J Biol Chem. 2006 Mar 3;281(9):5357-63.

16.

A combined transmembrane topology and signal peptide prediction method.

Käll L, Krogh A, Sonnhammer EL.

J Mol Biol. 2004 May 14;338(5):1027-36.

PMID:
15111065
17.

Enhanced membrane protein topology prediction using a hierarchical classification method and a new scoring function.

Lo A, Chiu HS, Sung TY, Lyu PC, Hsu WL.

J Proteome Res. 2008 Feb;7(2):487-96.

PMID:
18081245
18.

CCHMM_PROF: a HMM-based coiled-coil predictor with evolutionary information.

Bartoli L, Fariselli P, Krogh A, Casadio R.

Bioinformatics. 2009 Nov 1;25(21):2757-63. doi: 10.1093/bioinformatics/btp539.

19.

Sequence-based protein structure prediction using a reduced state-space hidden Markov model.

Lampros C, Costas Papaloukas, Exarchos TP, Yorgos Goletsis, Fotiadis DI.

Comput Biol Med. 2007 Sep;37(9):1211-24.

PMID:
17161834
20.
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