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Items: 1 to 20 of 92

1.

Transdab wiki: the interactive transglutaminase substrate database on web 2.0 surface.

Csosz E, Meskó B, Fésüs L.

Amino Acids. 2009 Apr;36(4):615-7. doi: 10.1007/s00726-008-0121-y. Epub 2008 Jul 2. Review.

PMID:
18594947
2.

Substrate preference of transglutaminase 2 revealed by logistic regression analysis and intrinsic disorder examination.

Csosz E, Bagossi P, Nagy Z, Dosztanyi Z, Simon I, Fesus L.

J Mol Biol. 2008 Nov 7;383(2):390-402. doi: 10.1016/j.jmb.2008.08.026. Epub 2008 Aug 22.

PMID:
18761350
3.

PFD: a database for the investigation of protein folding kinetics and stability.

Fulton KF, Devlin GL, Jodun RA, Silvestri L, Bottomley SP, Fersht AR, Buckle AM.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D279-83.

4.

VIPERdb: a relational database for structural virology.

Shepherd CM, Borelli IA, Lander G, Natarajan P, Siddavanahalli V, Bajaj C, Johnson JE, Brooks CL 3rd, Reddy VS.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D386-9.

5.
6.

TOPDB: topology data bank of transmembrane proteins.

Tusnády GE, Kalmár L, Simon I.

Nucleic Acids Res. 2008 Jan;36(Database issue):D234-9. Epub 2007 Oct 5.

7.

PDBWiki: added value through community annotation of the Protein Data Bank.

Stehr H, Duarte JM, Lappe M, Bhak J, Bolser DM.

Database (Oxford). 2010 Jul 6;2010:baq009. doi: 10.1093/database/baq009.

8.

SMART 6: recent updates and new developments.

Letunic I, Doerks T, Bork P.

Nucleic Acids Res. 2009 Jan;37(Database issue):D229-32. doi: 10.1093/nar/gkn808. Epub 2008 Oct 31.

9.

PDB Editor: a user-friendly Java-based Protein Data Bank file editor with a GUI.

Lee J, Kim SH.

Acta Crystallogr D Biol Crystallogr. 2009 Apr;65(Pt 4):399-402. doi: 10.1107/S090744490900451X. Epub 2009 Mar 19.

PMID:
19307724
10.

Wiki use in mental health practice: recognizing potential use of collaborative technology.

Bastida R, McGrath I, Maude P.

Int J Ment Health Nurs. 2010 Apr;19(2):142-8. doi: 10.1111/j.1447-0349.2009.00655.x.

PMID:
20367652
11.

Searching the protein interaction space through the MINT database.

Chatr-Aryamontri A, Zanzoni A, Ceol A, Cesareni G.

Methods Mol Biol. 2008;484:305-17. doi: 10.1007/978-1-59745-398-1_20.

PMID:
18592188
12.

A pitfall of wiki solution for biological databases.

Arita M.

Brief Bioinform. 2009 May;10(3):295-6. doi: 10.1093/bib/bbn053. Epub 2008 Dec 6.

PMID:
19060305
13.

ZifBASE: a database of zinc finger proteins and associated resources.

Jayakanthan M, Muthukumaran J, Chandrasekar S, Chawla K, Punetha A, Sundar D.

BMC Genomics. 2009 Sep 9;10:421. doi: 10.1186/1471-2164-10-421.

14.

Protein ligand interaction database (PLID).

Reddy AS, Amarnath HS, Bapi RS, Sastry GM, Sastry GN.

Comput Biol Chem. 2008 Oct;32(5):387-90. doi: 10.1016/j.compbiolchem.2008.03.017. Epub 2008 Apr 8.

PMID:
18514578
15.

The Molecule Pages database.

Saunders B, Lyon S, Day M, Riley B, Chenette E, Subramaniam S, Vadivelu I.

Nucleic Acids Res. 2008 Jan;36(Database issue):D700-6. Epub 2007 Oct 26. Erratum in: Nucleic Acids Res.2008 Apr;36(7): 2457.

16.

AlterORF: a database of alternate open reading frames.

Pedroso I, Rivera G, Lazo F, Chacón M, Ossandón F, Veloso FA, Holmes DS.

Nucleic Acids Res. 2008 Jan;36(Database issue):D517-8. Epub 2007 Dec 20.

17.

PepCyber:P~PEP: a database of human protein protein interactions mediated by phosphoprotein-binding domains.

Gong W, Zhou D, Ren Y, Wang Y, Zuo Z, Shen Y, Xiao F, Zhu Q, Hong A, Zhou X, Gao X, Li T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D679-83. Epub 2007 Dec 26.

18.

P3DB: a plant protein phosphorylation database.

Gao J, Agrawal GK, Thelen JJ, Xu D.

Nucleic Acids Res. 2009 Jan;37(Database issue):D960-2. doi: 10.1093/nar/gkn733. Epub 2008 Oct 17.

19.

STRING 8--a global view on proteins and their functional interactions in 630 organisms.

Jensen LJ, Kuhn M, Stark M, Chaffron S, Creevey C, Muller J, Doerks T, Julien P, Roth A, Simonovic M, Bork P, von Mering C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D412-6. doi: 10.1093/nar/gkn760. Epub 2008 Oct 21.

20.

MapsiDB: an integrated web database for type I polyketide synthases.

Tae H, Sohng JK, Park K.

Bioprocess Biosyst Eng. 2009 Oct;32(6):723-7. doi: 10.1007/s00449-008-0296-3. Epub 2009 Feb 11.

PMID:
19205748

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