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Items: 1 to 20 of 418

1.

Using indirect protein-protein interactions for protein complex prediction.

Chua HN, Ning K, Sung WK, Leong HW, Wong L.

J Bioinform Comput Biol. 2008 Jun;6(3):435-66.

PMID:
18574858
2.

Using indirect protein-protein interactions for protein complex predication.

Chua HN, Ning K, Sung WK, Leong HW, Wong L.

Comput Syst Bioinformatics Conf. 2007;6:97-109.

3.

Complex discovery from weighted PPI networks.

Liu G, Wong L, Chua HN.

Bioinformatics. 2009 Aug 1;25(15):1891-7. doi: 10.1093/bioinformatics/btp311. Epub 2009 May 12.

PMID:
19435747
4.

Protein complex prediction via cost-based clustering.

King AD, Przulj N, Jurisica I.

Bioinformatics. 2004 Nov 22;20(17):3013-20. Epub 2004 Jun 4.

PMID:
15180928
5.

Clustering algorithms for detecting functional modules in protein interaction networks.

Gao L, Sun PG, Song J.

J Bioinform Comput Biol. 2009 Feb;7(1):217-42.

PMID:
19226668
6.

Development and implementation of an algorithm for detection of protein complexes in large interaction networks.

Altaf-Ul-Amin M, Shinbo Y, Mihara K, Kurokawa K, Kanaya S.

BMC Bioinformatics. 2006 Apr 14;7:207.

7.

Fitting a geometric graph to a protein-protein interaction network.

Higham DJ, Rasajski M, Przulj N.

Bioinformatics. 2008 Apr 15;24(8):1093-9. doi: 10.1093/bioinformatics/btn079. Epub 2008 Mar 14.

PMID:
18344248
8.

k-Partite cliques of protein interactions: A novel subgraph topology for functional coherence analysis on PPI networks.

Liu Q, Chen YP, Li J.

J Theor Biol. 2014 Jan 7;340:146-54. doi: 10.1016/j.jtbi.2013.09.013. Epub 2013 Sep 19.

PMID:
24056214
9.

An algorithm for finding functional modules and protein complexes in protein-protein interaction networks.

Cui G, Chen Y, Huang DS, Han K.

J Biomed Biotechnol. 2008;2008:860270. doi: 10.1155/2008/860270.

10.

Identification of functional modules in a PPI network by clique percolation clustering.

Zhang S, Ning X, Zhang XS.

Comput Biol Chem. 2006 Dec;30(6):445-51. Epub 2006 Nov 13.

PMID:
17098476
11.

Protein complex prediction based on simultaneous protein interaction network.

Jung SH, Hyun B, Jang WH, Hur HY, Han DS.

Bioinformatics. 2010 Feb 1;26(3):385-91. doi: 10.1093/bioinformatics/btp668. Epub 2009 Dec 4.

PMID:
19965885
12.

Interaction graph mining for protein complexes using local clique merging.

Li XL, Tan SH, Foo CS, Ng SK.

Genome Inform. 2005;16(2):260-9.

PMID:
16901108
13.

Discovering functional interdependence relationship in PPI networks for protein complex identification.

Lam WW, Chan KC.

IEEE Trans Biomed Eng. 2012 Apr;59(4):899-908. doi: 10.1109/TBME.2010.2093524. Epub 2010 Nov 18.

PMID:
21095855
14.

Protein complex prediction based on mutually exclusive interactions in protein interaction network.

Jung SH, Jang WH, Hur HY, Hyun B, Han DS.

Genome Inform. 2008;21:77-88.

15.

Identifying the topology of protein complexes from affinity purification assays.

Friedel CC, Zimmer R.

Bioinformatics. 2009 Aug 15;25(16):2140-6. doi: 10.1093/bioinformatics/btp353. Epub 2009 Jun 8.

16.

Application of graph colouring to biological networks.

Khor S.

IET Syst Biol. 2010 May;4(3):185-92. doi: 10.1049/iet-syb.2009.0038.

PMID:
20499999
17.

Combining functional and topological properties to identify core modules in protein interaction networks.

Lubovac Z, Gamalielsson J, Olsson B.

Proteins. 2006 Sep 1;64(4):948-59.

PMID:
16794996
18.

Functional topology in a network of protein interactions.

Przulj N, Wigle DA, Jurisica I.

Bioinformatics. 2004 Feb 12;20(3):340-8.

PMID:
14960460
19.

Multi-agent-based bio-network for systems biology: protein-protein interaction network as an example.

Ren LH, Ding YS, Shen YZ, Zhang XF.

Amino Acids. 2008 Oct;35(3):565-72. doi: 10.1007/s00726-008-0081-2. Epub 2008 Apr 19.

PMID:
18425405
20.

Supervised maximum-likelihood weighting of composite protein networks for complex prediction.

Yong CH, Liu G, Chua HN, Wong L.

BMC Syst Biol. 2012;6 Suppl 2:S13. doi: 10.1186/1752-0509-6-S2-S13. Epub 2012 Dec 12.

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