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Items: 1 to 20 of 78

1.

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes.

Studer RA, Penel S, Duret L, Robinson-Rechavi M.

Genome Res. 2008 Sep;18(9):1393-402. doi: 10.1101/gr.076992.108. Epub 2008 Jun 18.

2.

The endothelin system: evolution of vertebrate-specific ligand-receptor interactions by three rounds of genome duplication.

Braasch I, Volff JN, Schartl M.

Mol Biol Evol. 2009 Apr;26(4):783-99. doi: 10.1093/molbev/msp015. Epub 2009 Jan 27.

PMID:
19174480
3.

Whole genome duplications and expansion of the vertebrate GATA transcription factor gene family.

Gillis WQ, St John J, Bowerman B, Schneider SQ.

BMC Evol Biol. 2009 Aug 20;9:207. doi: 10.1186/1471-2148-9-207.

4.

Two rounds of whole genome duplication in the ancestral vertebrate.

Dehal P, Boore JL.

PLoS Biol. 2005 Oct;3(10):e314. Epub 2005 Sep 6.

5.

Simultaneous expansions of microRNAs and protein-coding genes by gene/genome duplications in early vertebrates.

Gu X, Su Z, Huang Y.

J Exp Zool B Mol Dev Evol. 2009 May 15;312B(3):164-70. doi: 10.1002/jez.b.21273.

PMID:
19214983
6.

Vertebrate codon bias indicates a highly GC-rich ancestral genome.

Nabiyouni M, Prakash A, Fedorov A.

Gene. 2013 Apr 25;519(1):113-9. doi: 10.1016/j.gene.2013.01.033. Epub 2013 Jan 31.

PMID:
23376453
7.

Positive selection and functional divergence after melanopsin gene duplication.

Dong C, Zhang J, Qiao J, He G.

Biochem Genet. 2012 Apr;50(3-4):235-48. doi: 10.1007/s10528-011-9466-0. Epub 2011 Sep 28.

PMID:
21952875
8.

Natural selection and functional diversification of the epidermal growth factor receptor EGFR family in vertebrates.

Liu Y, He W, Long J, Pang F, Xian L, Chen M, Wu Y, Hu Y.

Genomics. 2013 Jun;101(6):318-25. doi: 10.1016/j.ygeno.2013.03.001. Epub 2013 Mar 14.

9.

Phylogenetic dating and characterization of gene duplications in vertebrates: the cartilaginous fish reference.

Robinson-Rechavi M, Boussau B, Laudet V.

Mol Biol Evol. 2004 Mar;21(3):580-6. Epub 2003 Dec 23.

PMID:
14694077
10.

Functional evolution of the vertebrate Myb gene family: B-Myb, but neither A-Myb nor c-Myb, complements Drosophila Myb in hemocytes.

Davidson CJ, Tirouvanziam R, Herzenberg LA, Lipsick JS.

Genetics. 2005 Jan;169(1):215-29. Epub 2004 Oct 16.

11.

Evolution of vertebrate genes related to prion and Shadoo proteins--clues from comparative genomic analysis.

Premzl M, Gready JE, Jermiin LS, Simonic T, Marshall Graves JA.

Mol Biol Evol. 2004 Dec;21(12):2210-31. Epub 2004 Sep 1.

PMID:
15342797
12.

Impact of gene gains, losses and duplication modes on the origin and diversification of vertebrates.

Cañestro C, Albalat R, Irimia M, Garcia-Fernàndez J.

Semin Cell Dev Biol. 2013 Feb;24(2):83-94. doi: 10.1016/j.semcdb.2012.12.008. Epub 2013 Jan 3. Review.

PMID:
23291262
13.

Evolution of developmental roles of Pax2/5/8 paralogs after independent duplication in urochordate and vertebrate lineages.

Bassham S, Cañestro C, Postlethwait JH.

BMC Biol. 2008 Aug 22;6:35. doi: 10.1186/1741-7007-6-35.

14.

Evolutionary mechanisms underlying the functional divergence of duplicate genes involved in vertebrates' circadian rhythm pathway.

Layeghifard M, Rabani R, Pirhaji L, Yakhchali B.

Gene. 2008 Dec 15;426(1-2):65-71. doi: 10.1016/j.gene.2008.08.014. Epub 2008 Sep 3.

PMID:
18804153
15.

The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes.

Van de Peer Y, Taylor JS, Braasch I, Meyer A.

J Mol Evol. 2001 Oct-Nov;53(4-5):436-46.

PMID:
11675603
16.

Evolutionary dynamics and functional specialization of plant paralogs formed by whole and small-scale genome duplications.

Carretero-Paulet L, Fares MA.

Mol Biol Evol. 2012 Nov;29(11):3541-51. doi: 10.1093/molbev/mss162. Epub 2012 Jun 24.

PMID:
22734049
17.

New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes.

Panopoulou G, Hennig S, Groth D, Krause A, Poustka AJ, Herwig R, Vingron M, Lehrach H.

Genome Res. 2003 Jun;13(6A):1056-66.

18.
19.

Gene conversion and functional divergence in the beta-globin gene family.

Aguileta G, Bielawski JP, Yang Z.

J Mol Evol. 2004 Aug;59(2):177-89.

PMID:
15486692
20.

Statistical properties of the branch-site test of positive selection.

Yang Z, dos Reis M.

Mol Biol Evol. 2011 Mar;28(3):1217-28. doi: 10.1093/molbev/msq303. Epub 2010 Nov 18.

PMID:
21087944

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