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Items: 1 to 20 of 192

1.

Predicting B cell epitope residues with network topology based amino acid indices.

Huang J, Honda W, Kanehisa M.

Genome Inform. 2007;19:40-9.

PMID:
18546503
2.

New amino acid indices based on residue network topology.

Huang J, Kawashima S, Kanehisa M.

Genome Inform. 2007;18:152-61.

PMID:
18546483
3.

Machine learning approaches for prediction of linear B-cell epitopes on proteins.

Söllner J, Mayer B.

J Mol Recognit. 2006 May-Jun;19(3):200-8.

PMID:
16598694
5.

Use of amino acid composition to predict epitope residues of individual antibodies.

Soga S, Kuroda D, Shirai H, Kobori M, Hirayama N.

Protein Eng Des Sel. 2010 Jun;23(6):441-8. doi: 10.1093/protein/gzq014. Epub 2010 Mar 19.

PMID:
20304974
6.

Benchmarking B cell epitope prediction: underperformance of existing methods.

Blythe MJ, Flower DR.

Protein Sci. 2005 Jan;14(1):246-8. Epub 2004 Dec 2.

7.

A method for protein accessibility prediction based on residue types and conformational states.

Zarei R, Arab S, Sadeghi M.

Comput Biol Chem. 2007 Oct;31(5-6):384-8. Epub 2007 Aug 19.

PMID:
17888743
8.

Natural/random protein classification models based on star network topological indices.

Munteanu CR, González-Díaz H, Borges F, de Magalhães AL.

J Theor Biol. 2008 Oct 21;254(4):775-83. doi: 10.1016/j.jtbi.2008.07.018. Epub 2008 Jul 22.

PMID:
18692072
9.

Epitope prediction based on random peptide library screening: benchmark dataset and prediction tools evaluation.

Sun P, Chen W, Huang Y, Wang H, Ma Z, Lv Y.

Molecules. 2011 Jun 16;16(6):4971-93. doi: 10.3390/molecules16064971.

10.

An introduction to epitope prediction methods and software.

Yang X, Yu X.

Rev Med Virol. 2009 Mar;19(2):77-96. doi: 10.1002/rmv.602. Review.

PMID:
19101924
11.

Computational prediction of heme-binding residues by exploiting residue interaction network.

Liu R, Hu J.

PLoS One. 2011;6(10):e25560. doi: 10.1371/journal.pone.0025560. Epub 2011 Oct 3.

12.

PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure.

Sweredoski MJ, Baldi P.

Bioinformatics. 2008 Jun 15;24(12):1459-60. doi: 10.1093/bioinformatics/btn199. Epub 2008 Apr 28.

PMID:
18443018
13.

Real value prediction of protein solvent accessibility using enhanced PSSM features.

Chang DT, Huang HY, Syu YT, Wu CP.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S12. doi: 10.1186/1471-2105-9-S12-S12.

14.

[Linear B-cell epitope prediction].

Davydov IaI, Tonevitskiĭ AG.

Mol Biol (Mosk). 2009 Jan-Feb;43(1):166-74. Review. Russian.

PMID:
19334539
15.
16.

Prediction of linear B-cell epitopes.

Reimer U.

Methods Mol Biol. 2009;524:335-44. doi: 10.1007/978-1-59745-450-6_24.

PMID:
19377956
17.
18.
19.

Prediction of linear B-cell epitopes using amino acid pair antigenicity scale.

Chen J, Liu H, Yang J, Chou KC.

Amino Acids. 2007 Sep;33(3):423-8. Epub 2007 Jan 26.

PMID:
17252308
20.

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