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Items: 1 to 20 of 142

1.

Sequencing and assembly of highly heterozygous genome of Vitis vinifera L. cv Pinot Noir: problems and solutions.

Zharkikh A, Troggio M, Pruss D, Cestaro A, Eldrdge G, Pindo M, Mitchell JT, Vezzulli S, Bhatnagar S, Fontana P, Viola R, Gutin A, Salamini F, Skolnick M, Velasco R.

J Biotechnol. 2008 Aug 31;136(1-2):38-43. doi: 10.1016/j.jbiotec.2008.04.013. Epub 2008 May 3.

PMID:
18538432
2.

A high quality draft consensus sequence of the genome of a heterozygous grapevine variety.

Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, Pruss D, Pindo M, Fitzgerald LM, Vezzulli S, Reid J, Malacarne G, Iliev D, Coppola G, Wardell B, Micheletti D, Macalma T, Facci M, Mitchell JT, Perazzolli M, Eldredge G, Gatto P, Oyzerski R, Moretto M, Gutin N, Stefanini M, Chen Y, Segala C, Davenport C, Demattè L, Mraz A, Battilana J, Stormo K, Costa F, Tao Q, Si-Ammour A, Harkins T, Lackey A, Perbost C, Taillon B, Stella A, Solovyev V, Fawcett JA, Sterck L, Vandepoele K, Grando SM, Toppo S, Moser C, Lanchbury J, Bogden R, Skolnick M, Sgaramella V, Bhatnagar SK, Fontana P, Gutin A, Van de Peer Y, Salamini F, Viola R.

PLoS One. 2007 Dec 19;2(12):e1326.

3.

Functional annotation, genome organization and phylogeny of the grapevine (Vitis vinifera) terpene synthase gene family based on genome assembly, FLcDNA cloning, and enzyme assays.

Martin DM, Aubourg S, Schouwey MB, Daviet L, Schalk M, Toub O, Lund ST, Bohlmann J.

BMC Plant Biol. 2010 Oct 21;10:226. doi: 10.1186/1471-2229-10-226.

4.

A SNP transferability survey within the genus Vitis.

Vezzulli S, Micheletti D, Riaz S, Pindo M, Viola R, This P, Walker MA, Troggio M, Velasco R.

BMC Plant Biol. 2008 Dec 16;8:128. doi: 10.1186/1471-2229-8-128.

5.

The metacaspase gene family of Vitis vinifera L.: characterization and differential expression during ovule abortion in stenospermocarpic seedless grapes.

Zhang C, Gong P, Wei R, Li S, Zhang X, Yu Y, Wang Y.

Gene. 2013 Oct 10;528(2):267-76. doi: 10.1016/j.gene.2013.06.062. Epub 2013 Jul 9.

PMID:
23845786
6.

The alternative oxidase family of Vitis vinifera reveals an attractive model to study the importance of genomic design.

Costa JH, de Melo DF, Gouveia Z, Cardoso HG, Peixe A, Arnholdt-Schmitt B.

Physiol Plant. 2009 Dec;137(4):553-65. doi: 10.1111/j.1399-3054.2009.01267.x. Epub 2009 Jul 6.

PMID:
19682279
7.

Low-coverage massively parallel pyrosequencing of cDNAs enables proteomics in non-model species: comparison of a species-specific database generated by pyrosequencing with databases from related species for proteome analysis of pea chloroplast envelopes.

Bräutigam A, Shrestha RP, Whitten D, Wilkerson CG, Carr KM, Froehlich JE, Weber AP.

J Biotechnol. 2008 Aug 31;136(1-2):44-53. doi: 10.1016/j.jbiotec.2008.02.007. Epub 2008 Feb 17.

PMID:
18394738
8.

Physical mapping in highly heterozygous genomes: a physical contig map of the Pinot Noir grapevine cultivar.

Scalabrin S, Troggio M, Moroldo M, Pindo M, Felice N, Coppola G, Prete G, Malacarne G, Marconi R, Faes G, Jurman I, Grando S, Jesse T, Segala C, Valle G, Policriti A, Fontana P, Morgante M, Velasco R.

BMC Genomics. 2010 Mar 26;11:204. doi: 10.1186/1471-2164-11-204.

9.

Transposable elements are a major cause of somatic polymorphism in Vitis vinifera L.

Carrier G, Le Cunff L, Dereeper A, Legrand D, Sabot F, Bouchez O, Audeguin L, Boursiquot JM, This P.

PLoS One. 2012;7(3):e32973. doi: 10.1371/journal.pone.0032973. Epub 2012 Mar 12.

10.

The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.

Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Götker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Dröge M, Pühler A.

J Biotechnol. 2008 Aug 31;136(1-2):11-21. doi: 10.1016/j.jbiotec.2008.02.009. Epub 2008 Mar 10.

PMID:
18367281
11.

A dense single-nucleotide polymorphism-based genetic linkage map of grapevine (Vitis vinifera L.) anchoring Pinot Noir bacterial artificial chromosome contigs.

Troggio M, Malacarne G, Coppola G, Segala C, Cartwright DA, Pindo M, Stefanini M, Mank R, Moroldo M, Morgante M, Grando MS, Velasco R.

Genetics. 2007 Aug;176(4):2637-50. Epub 2007 Jul 1.

12.

De novo sequencing of plant genomes using second-generation technologies.

Imelfort M, Edwards D.

Brief Bioinform. 2009 Nov;10(6):609-18. doi: 10.1093/bib/bbp039. Review.

PMID:
19933209
13.

Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.

Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehoever P, Gartemann KH, Arnold W, Blom J, Brinkrolf K, Brune I, Götker S, Weisshaar B, Goesmann A, Dröge M, Pühler A.

J Biotechnol. 2008 Aug 31;136(1-2):22-30. doi: 10.1016/j.jbiotec.2008.03.004. Epub 2008 Mar 20.

PMID:
18430482
14.

Comparative analysis of Gossypium and Vitis genomes indicates genome duplication specific to the Gossypium lineage.

Lin L, Tang H, Compton RO, Lemke C, Rainville LK, Wang X, Rong J, Rana MK, Paterson AH.

Genomics. 2011 May;97(5):313-20. doi: 10.1016/j.ygeno.2011.02.007. Epub 2011 Feb 22.

15.

A skin color mutation of grapevine, from black-skinned Pinot Noir to white-skinned Pinot Blanc, is caused by deletion of the functional VvmybA1 allele.

Yakushiji H, Kobayashi S, Goto-Yamamoto N, Tae Jeong S, Sueta T, Mitani N, Azuma A.

Biosci Biotechnol Biochem. 2006 Jun;70(6):1506-8.

16.

BAC-end sequence-based SNPs and Bin mapping for rapid integration of physical and genetic maps in apple.

Han Y, Chagné D, Gasic K, Rikkerink EH, Beever JE, Gardiner SE, Korban SS.

Genomics. 2009 Mar;93(3):282-8. doi: 10.1016/j.ygeno.2008.11.005. Epub 2008 Dec 21.

17.

Ontology-oriented retrieval of putative microRNAs in Vitis vinifera via GrapeMiRNA: a web database of de novo predicted grape microRNAs.

Lazzari B, Caprera A, Cestaro A, Merelli I, Del Corvo M, Fontana P, Milanesi L, Velasco R, Stella A.

BMC Plant Biol. 2009 Jun 29;9:82. doi: 10.1186/1471-2229-9-82.

18.

Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11.

Stiens M, Becker A, Bekel T, Gödde V, Goesmann A, Niehaus K, Schneiker-Bekel S, Selbitschka W, Weidner S, Schlüter A, Pühler A.

J Biotechnol. 2008 Aug 31;136(1-2):31-7. doi: 10.1016/j.jbiotec.2008.04.014. Epub 2008 May 9.

PMID:
18562031
19.

Molecular characterization and expression analysis of the Rop GTPase family in Vitis vinifera.

Abbal P, Pradal M, Sauvage FX, Chatelet P, Paillard S, Canaguier A, Adam-Blondon AF, Tesniere C.

J Exp Bot. 2007;58(10):2641-52. Epub 2007 Jun 19.

PMID:
17578867
20.

SNP high-throughput screening in grapevine using the SNPlex genotyping system.

Pindo M, Vezzulli S, Coppola G, Cartwright DA, Zharkikh A, Velasco R, Troggio M.

BMC Plant Biol. 2008 Jan 28;8:12. doi: 10.1186/1471-2229-8-12.

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