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Items: 1 to 20 of 172

1.

BioLit: integrating biological literature with databases.

Fink JL, Kushch S, Williams PR, Bourne PE.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W385-9. doi: 10.1093/nar/gkn317. Epub 2008 May 31.

2.

Integration of open access literature into the RCSB Protein Data Bank using BioLit.

Prlić A, Martinez MA, Dimitropoulos D, Beran B, Yukich BT, Rose PW, Bourne PE, Fink JL.

BMC Bioinformatics. 2010 Apr 29;11:220. doi: 10.1186/1471-2105-11-220.

3.

Semantic-JSON: a lightweight web service interface for Semantic Web contents integrating multiple life science databases.

Kobayashi N, Ishii M, Takahashi S, Mochizuki Y, Matsushima A, Toyoda T.

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W533-40. doi: 10.1093/nar/gkr353. Epub 2011 Jun 1.

4.

Using XML technology for the ontology-based semantic integration of life science databases.

Philippi S, Köhler J.

IEEE Trans Inf Technol Biomed. 2004 Jun;8(2):154-60.

PMID:
15217260
5.

MetaBasis: a web-based database containing metadata on software tools and databases in the field of bioinformatics.

Atlamazoglou V, Thireou T, Hamodrakas Y, Spyrou G.

Appl Bioinformatics. 2006;5(3):187-92.

PMID:
16922600
6.

HubMed: a web-based biomedical literature search interface.

Eaton AD.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W745-7.

7.

JXP4BIGI: a generalized, Java XML-based approach for biological information gathering and integration.

Huang Y, Ni T, Zhou L, Su S.

Bioinformatics. 2003 Dec 12;19(18):2351-8.

PMID:
14668218
8.
9.

The RIKEN integrated database of mammals.

Masuya H, Makita Y, Kobayashi N, Nishikata K, Yoshida Y, Mochizuki Y, Doi K, Takatsuki T, Waki K, Tanaka N, Ishii M, Matsushima A, Takahashi S, Hijikata A, Kozaki K, Furuichi T, Kawaji H, Wakana S, Nakamura Y, Yoshiki A, Murata T, Fukami-Kobayashi K, Mohan S, Ohara O, Hayashizaki Y, Mizoguchi R, Obata Y, Toyoda T.

Nucleic Acids Res. 2011 Jan;39(Database issue):D861-70. doi: 10.1093/nar/gkq1078. Epub 2010 Nov 13.

10.

TogoDoc server/client system: smart recommendation and efficient management of life science literature.

Iwasaki W, Yamamoto Y, Takagi T.

PLoS One. 2010 Dec 13;5(12):e15305. doi: 10.1371/journal.pone.0015305.

11.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

13.

HPD: an online integrated human pathway database enabling systems biology studies.

Chowbina SR, Wu X, Zhang F, Li PM, Pandey R, Kasamsetty HN, Chen JY.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S5. doi: 10.1186/1471-2105-10-S11-S5.

14.

Pathway Commons, a web resource for biological pathway data.

Cerami EG, Gross BE, Demir E, Rodchenkov I, Babur O, Anwar N, Schultz N, Bader GD, Sander C.

Nucleic Acids Res. 2011 Jan;39(Database issue):D685-90. doi: 10.1093/nar/gkq1039. Epub 2010 Nov 10.

15.

Generic design of Web-based clinical databases.

Anhøj J.

J Med Internet Res. 2003 Nov 4;5(4):e27. Review.

16.

iProLINK: an integrated protein resource for literature mining.

Hu ZZ, Mani I, Hermoso V, Liu H, Wu CH.

Comput Biol Chem. 2004 Dec;28(5-6):409-16.

PMID:
15556482
17.

LabKey Server: an open source platform for scientific data integration, analysis and collaboration.

Nelson EK, Piehler B, Eckels J, Rauch A, Bellew M, Hussey P, Ramsay S, Nathe C, Lum K, Krouse K, Stearns D, Connolly B, Skillman T, Igra M.

BMC Bioinformatics. 2011 Mar 9;12:71. doi: 10.1186/1471-2105-12-71.

18.
19.

New concepts for building vocabulary for cell image ontologies.

Plant AL, Elliott JT, Bhat TN.

BMC Bioinformatics. 2011 Dec 21;12:487. doi: 10.1186/1471-2105-12-487.

20.

Techniques for optimization of queries on integrated biological resources.

Lacroix Z, Raschid L, Eckman BA.

J Bioinform Comput Biol. 2004 Jun;2(2):375-411. Review.

PMID:
15297988

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