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Items: 1 to 20 of 341

1.

UCSC genome browser tutorial.

Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ.

Genomics. 2008 Aug;92(2):75-84. doi: 10.1016/j.ygeno.2008.02.003. Epub 2008 Jun 2. Review.

2.

UCSC genome browser: deep support for molecular biomedical research.

Mangan ME, Williams JM, Lathe SM, Karolchik D, Lathe WC 3rd.

Biotechnol Annu Rev. 2008;14:63-108. doi: 10.1016/S1387-2656(08)00003-3. Review.

PMID:
18606360
3.

Comparative genomic analysis using the UCSC genome browser.

Karolchik D, Bejerano G, Hinrichs AS, Kuhn RM, Miller W, Rosenbloom KR, Zweig AS, Haussler D, Kent WJ.

Methods Mol Biol. 2007;395:17-34.

PMID:
17993665
4.

The UCSC Genome Browser Database: update 2006.

Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8.

5.

The UCSC Genome Browser Database.

Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ; University of California Santa Cruz..

Nucleic Acids Res. 2003 Jan 1;31(1):51-4.

6.

Analysis of genomic DNA with the UCSC genome browser.

Pevsner J.

Methods Mol Biol. 2009;537:277-301. doi: 10.1007/978-1-59745-251-9_14.

PMID:
19378150
7.

The UCSC Proteome Browser.

Hsu F, Pringle TH, Kuhn RM, Karolchik D, Diekhans M, Haussler D, Kent WJ.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D454-8.

8.

Piloting the zebrafish genome browser.

DiBiase A, Harte RA, Zhou Y, Zon L, Kent WJ.

Dev Dyn. 2006 Mar;235(3):747-53.

9.

Navigating protected genomics data with UCSC Genome Browser in a Box.

Haeussler M, Raney BJ, Hinrichs AS, Clawson H, Zweig AS, Karolchik D, Casper J, Speir ML, Haussler D, Kent WJ.

Bioinformatics. 2015 Mar 1;31(5):764-6. doi: 10.1093/bioinformatics/btu712. Epub 2014 Oct 27.

10.

The UCSC Known Genes.

Hsu F, Kent WJ, Clawson H, Kuhn RM, Diekhans M, Haussler D.

Bioinformatics. 2006 May 1;22(9):1036-46. Epub 2006 Feb 24.

PMID:
16500937
11.

The UCSC Genome Browser database: update 2010.

Rhead B, Karolchik D, Kuhn RM, Hinrichs AS, Zweig AS, Fujita PA, Diekhans M, Smith KE, Rosenbloom KR, Raney BJ, Pohl A, Pheasant M, Meyer LR, Learned K, Hsu F, Hillman-Jackson J, Harte RA, Giardine B, Dreszer TR, Clawson H, Barber GP, Haussler D, Kent WJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D613-9. doi: 10.1093/nar/gkp939. Epub 2009 Nov 11.

12.

The UCSC Genome Browser.

Karolchik D, Hinrichs AS, Kent WJ.

Curr Protoc Bioinformatics. 2007 Mar;Chapter 1:Unit 1.4. doi: 10.1002/0471250953.bi0104s17.

PMID:
18428780
13.

The UCSC Genome Browser.

Karolchik D, Hinrichs AS, Kent WJ.

Curr Protoc Bioinformatics. 2009 Dec;Chapter 1:Unit1.4. doi: 10.1002/0471250953.bi0104s28.

14.

The UCSC genome browser database: update 2007.

Kuhn RM, Karolchik D, Zweig AS, Trumbower H, Thomas DJ, Thakkapallayil A, Sugnet CW, Stanke M, Smith KE, Siepel A, Rosenbloom KR, Rhead B, Raney BJ, Pohl A, Pedersen JS, Hsu F, Hinrichs AS, Harte RA, Diekhans M, Clawson H, Bejerano G, Barber GP, Baertsch R, Haussler D, Kent WJ.

Nucleic Acids Res. 2007 Jan;35(Database issue):D668-73. Epub 2006 Nov 16.

15.

The genome browser at UCSC for locating genes, and much more!

Bina M.

Mol Biotechnol. 2008 Mar;38(3):269-75. Epub 2007 Dec 4. Review.

PMID:
18058261
16.

Genomics made easier: an introductory tutorial to genome datamining.

Schattner P.

Genomics. 2009 Mar;93(3):187-95. doi: 10.1016/j.ygeno.2008.10.009. Epub 2008 Dec 5.

17.

ENCODE whole-genome data in the UCSC Genome Browser.

Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS, Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM, Karolchik D, Haussler D, Kent WJ.

Nucleic Acids Res. 2010 Jan;38(Database issue):D620-5. doi: 10.1093/nar/gkp961. Epub 2009 Nov 17.

18.

The UCSC Table Browser data retrieval tool.

Karolchik D, Hinrichs AS, Furey TS, Roskin KM, Sugnet CW, Haussler D, Kent WJ.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D493-6.

19.

The UCSC Genome Browser.

Karolchik D, Hinrichs AS, Kent WJ.

Curr Protoc Hum Genet. 2011 Oct;Chapter 18:Unit18.6. doi: 10.1002/0471142905.hg1806s71.

20.

GAIA: framework annotation of genomic sequence.

Bailey LC Jr, Fischer S, Schug J, Crabtree J, Gibson M, Overton GC.

Genome Res. 1998 Mar;8(3):234-50. Review.

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