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Items: 1 to 20 of 130

1.

MicroRNA-encoding long non-coding RNAs.

He S, Su H, Liu C, Skogerbø G, He H, He D, Zhu X, Liu T, Zhao Y, Chen R.

BMC Genomics. 2008 May 21;9:236. doi: 10.1186/1471-2164-9-236.

2.

Analyzing modular RNA structure reveals low global structural entropy in microRNA sequence.

Shaw TI, Manzour A, Wang Y, Malmberg RL, Cai L.

J Bioinform Comput Biol. 2011 Apr;9(2):283-98.

PMID:
21523933
3.

Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data.

Jung CH, Hansen MA, Makunin IV, Korbie DJ, Mattick JS.

BMC Genomics. 2010 Feb 1;11:77. doi: 10.1186/1471-2164-11-77.

4.
5.

Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans.

Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP.

Cell. 2006 Dec 15;127(6):1193-207.

6.

nocoRNAc: characterization of non-coding RNAs in prokaryotes.

Herbig A, Nieselt K.

BMC Bioinformatics. 2011 Jan 31;12:40. doi: 10.1186/1471-2105-12-40.

7.

Biocomputational prediction of non-coding RNAs in model cyanobacteria.

Voss B, Georg J, Schön V, Ude S, Hess WR.

BMC Genomics. 2009 Mar 23;10:123. doi: 10.1186/1471-2164-10-123.

8.

Identification and characterization of human non-coding RNAs with tissue-specific expression.

Sasaki YT, Sano M, Ideue T, Kin T, Asai K, Hirose T.

Biochem Biophys Res Commun. 2007 Jun 15;357(4):991-6. Epub 2007 Apr 17.

PMID:
17451645
9.

Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.

Deng W, Zhu X, Skogerbø G, Zhao Y, Fu Z, Wang Y, He H, Cai L, Sun H, Liu C, Li B, Bai B, Wang J, Jia D, Sun S, He H, Cui Y, Wang Y, Bu D, Chen R.

Genome Res. 2006 Jan;16(1):20-9. Epub 2005 Dec 12.

10.

RNAdb 2.0--an expanded database of mammalian non-coding RNAs.

Pang KC, Stephen S, Dinger ME, Engström PG, Lenhard B, Mattick JS.

Nucleic Acids Res. 2007 Jan;35(Database issue):D178-82. Epub 2006 Dec 1.

11.

Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function.

Pang KC, Frith MC, Mattick JS.

Trends Genet. 2006 Jan;22(1):1-5. Epub 2005 Nov 10.

PMID:
16290135
12.

Characterization of 43 non-protein-coding mRNA genes in Arabidopsis, including the MIR162a-derived transcripts.

Hirsch J, Lefort V, Vankersschaver M, Boualem A, Lucas A, Thermes C, d'Aubenton-Carafa Y, Crespi M.

Plant Physiol. 2006 Apr;140(4):1192-204. Epub 2006 Feb 24.

13.

Microarray analysis of ncRNA expression patterns in Caenorhabditis elegans after RNAi against snoRNA associated proteins.

Aftab MN, He H, Skogerbø G, Chen R.

BMC Genomics. 2008 Jun 11;9:278. doi: 10.1186/1471-2164-9-278.

14.

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa.

Morin RD, Aksay G, Dolgosheina E, Ebhardt HA, Magrini V, Mardis ER, Sahinalp SC, Unrau PJ.

Genome Res. 2008 Apr;18(4):571-84. doi: 10.1101/gr.6897308. Epub 2008 Mar 6.

15.

Subtractive hybridization identifies novel differentially expressed ncRNA species in EBV-infected human B cells.

Mrázek J, Kreutmayer SB, Grässer FA, Polacek N, Hüttenhofer A.

Nucleic Acids Res. 2007;35(10):e73. Epub 2007 May 3.

16.

Diversity of endogenous small non-coding RNAs in Oryza sativa.

Chen Z, Zhang J, Kong J, Li S, Fu Y, Li S, Zhang H, Li Y, Zhu Y.

Genetica. 2006 Sep-Nov;128(1-3):21-31.

PMID:
17028937
17.

Non-coding RNAs in Ciona intestinalis.

Missal K, Rose D, Stadler PF.

Bioinformatics. 2005 Sep 1;21 Suppl 2:ii77-8.

PMID:
16204130
18.

DeepBase: annotation and discovery of microRNAs and other noncoding RNAs from deep-sequencing data.

Yang JH, Qu LH.

Methods Mol Biol. 2012;822:233-48. doi: 10.1007/978-1-61779-427-8_16.

PMID:
22144203
19.

Duplicated RNA genes in teleost fish genomes.

Rose D, Jöris J, Hackermüller J, Reiche K, Li Q, Stadler PF.

J Bioinform Comput Biol. 2008 Dec;6(6):1157-75.

PMID:
19090022
20.

Structural conservation versus functional divergence of maternally expressed microRNAs in the Dlk1/Gtl2 imprinting region.

Kircher M, Bock C, Paulsen M.

BMC Genomics. 2008 Jul 23;9:346. doi: 10.1186/1471-2164-9-346.

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