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Items: 1 to 20 of 103

1.

Visualization of large influenza virus sequence datasets using adaptively aggregated trees with sampling-based subscale representation.

Zaslavsky L, Bao Y, Tatusova TA.

BMC Bioinformatics. 2008 May 16;9:237. doi: 10.1186/1471-2105-9-237.

2.

Interactive visualization software for exploring phylogenetic trees and clades.

Derthick M.

Bioinformatics. 2008 Mar 15;24(6):868-9. doi: 10.1093/bioinformatics/btn038. Epub 2008 Feb 8.

PMID:
18263642
3.

CTree: comparison of clusters between phylogenetic trees made easy.

Archer J, Robertson DL.

Bioinformatics. 2007 Nov 1;23(21):2952-3. Epub 2007 Aug 23.

PMID:
17717036
4.

Alvira: comparative genomics of viral strains.

Enault F, Fremez R, Baranowski E, Faraut T.

Bioinformatics. 2007 Aug 15;23(16):2178-9. Epub 2007 Jun 5.

PMID:
17550913
5.

TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities.

Gu S, Anderson I, Kunin V, Cipriano M, Minovitsky S, Weber G, Amenta N, Hamann B, Dubchak I.

Bioinformatics. 2007 Mar 15;23(6):764-6. Epub 2007 Jan 17.

PMID:
17234642
6.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

7.

PhyloGena--a user-friendly system for automated phylogenetic annotation of unknown sequences.

Hanekamp K, Bohnebeck U, Beszteri B, Valentin K.

Bioinformatics. 2007 Apr 1;23(7):793-801. Epub 2007 Mar 1.

PMID:
17332025
8.

COMPAM :visualization of combining pairwise alignments for multiple genomes.

Lee D, Choi JH, Dalkilic MM, Kim S.

Bioinformatics. 2006 Jan 15;22(2):242-4. Epub 2005 Nov 3.

PMID:
16269416
9.

BAPS 2: enhanced possibilities for the analysis of genetic population structure.

Corander J, Waldmann P, Marttinen P, Sillanpää MJ.

Bioinformatics. 2004 Oct 12;20(15):2363-9. Epub 2004 Apr 8.

PMID:
15073024
10.

DraGnET: software for storing, managing and analyzing annotated draft genome sequence data.

Duncan S, Sirkanungo R, Miller L, Phillips GJ.

BMC Bioinformatics. 2010 Feb 22;11:100. doi: 10.1186/1471-2105-11-100.

12.

Using the NCBI Map Viewer to browse genomic sequence data.

Wolfsberg TG.

Curr Protoc Bioinformatics. 2007 Jan;Chapter 1:Unit 1.5. doi: 10.1002/0471250953.bi0105s16.

PMID:
18428781
13.

VAMP: visualization and analysis of array-CGH, transcriptome and other molecular profiles.

La Rosa P, Viara E, Hupé P, Pierron G, Liva S, Neuvial P, Brito I, Lair S, Servant N, Robine N, Manié E, Brennetot C, Janoueix-Lerosey I, Raynal V, Gruel N, Rouveirol C, Stransky N, Stern MH, Delattre O, Aurias A, Radvanyi F, Barillot E.

Bioinformatics. 2006 Sep 1;22(17):2066-73. Epub 2006 Jul 4.

PMID:
16820431
14.

PEDSTATS: descriptive statistics, graphics and quality assessment for gene mapping data.

Wigginton JE, Abecasis GR.

Bioinformatics. 2005 Aug 15;21(16):3445-7. Epub 2005 Jun 9.

PMID:
15947021
15.

Virus variation resources at the National Center for Biotechnology Information: dengue virus.

Resch W, Zaslavsky L, Kiryutin B, Rozanov M, Bao Y, Tatusova TA.

BMC Microbiol. 2009 Apr 2;9:65. doi: 10.1186/1471-2180-9-65.

16.

GenAlyzer: interactive visualization of sequence similarities between entire genomes.

Choudhuri JV, Schleiermacher C, Kurtz S, Giegerich R.

Bioinformatics. 2004 Aug 12;20(12):1964-5. Epub 2004 Feb 26.

PMID:
14988113
17.

DNAVis: interactive visualization of comparative genome annotations.

Fiers MW, van de Wetering H, Peeters TH, van Wijk JJ, Nap JP.

Bioinformatics. 2006 Feb 1;22(3):354-5. Epub 2005 Dec 6.

PMID:
16332715
18.

Dendroscope: An interactive viewer for large phylogenetic trees.

Huson DH, Richter DC, Rausch C, Dezulian T, Franz M, Rupp R.

BMC Bioinformatics. 2007 Nov 22;8:460.

19.

Prophinder: a computational tool for prophage prediction in prokaryotic genomes.

Lima-Mendez G, Van Helden J, Toussaint A, Leplae R.

Bioinformatics. 2008 Mar 15;24(6):863-5. doi: 10.1093/bioinformatics/btn043. Epub 2008 Jan 30.

PMID:
18238785
20.

Calculation, visualization, and manipulation of MASTs (Maximum Agreement Subtrees).

Dong S, Kraemer E.

Proc IEEE Comput Syst Bioinform Conf. 2004:405-14.

PMID:
16448033

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