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Items: 1 to 20 of 96

1.

Use and misuse of the gene ontology annotations.

Rhee SY, Wood V, Dolinski K, Draghici S.

Nat Rev Genet. 2008 Jul;9(7):509-15. doi: 10.1038/nrg2363. Review.

PMID:
18475267
2.

GOChase: correcting errors from Gene Ontology-based annotations for gene products.

Park YR, Park CH, Kim JH.

Bioinformatics. 2005 Mar;21(6):829-31.

3.

Additional gene ontology structure for improved biological reasoning.

Myhre S, Tveit H, Mollestad T, Laegreid A.

Bioinformatics. 2006 Aug 15;22(16):2020-7.

4.

Gene Ontology annotation status of the fission yeast genome: preliminary coverage approaches 100%.

Aslett M, Wood V.

Yeast. 2006 Oct 15;23(13):913-9. Review. Erratum in: Yeast. 2007 May;24(5):457.

5.

Gene analogue finder: a GRID solution for finding functionally analogous gene products.

Tulipano A, Donvito G, Licciulli F, Maggi G, Gisel A.

BMC Bioinformatics. 2007 Sep 3;8:329.

6.

Cardiovascular GO annotation initiative year 1 report: why cardiovascular GO?

Lovering RC, Dimmer E, Khodiyar VK, Barrell DG, Scambler P, Hubank M, Apweiler R, Talmud PJ.

Proteomics. 2008 May;8(10):1950-3. doi: 10.1002/pmic.200800078.

PMID:
18491309
7.

On ontologies for biologists: the Gene Ontology--untangling the web.

Ashburner M, Lewis S.

Novartis Found Symp. 2002;247:66-80; discussion 80-3, 84-90, 244-52. Review.

PMID:
12539950
8.

Gene Regulation Ontology (GRO): design principles and use cases.

Beisswanger E, Lee V, Kim JJ, Rebholz-Schuhmann D, Splendiani A, Dameron O, Schulz S, Hahn U.

Stud Health Technol Inform. 2008;136:9-14.

PMID:
18487700
9.

Access to immunology through the Gene Ontology.

Lovering RC, Camon EB, Blake JA, Diehl AD.

Immunology. 2008 Oct;125(2):154-60. doi: 10.1111/j.1365-2567.2008.02940.x. Review.

10.
11.

Methods for gene ontology annotation.

Dimmer E, Berardini TZ, Barrell D, Camon E.

Methods Mol Biol. 2007;406:495-520.

PMID:
18287709
12.

AmiGO: online access to ontology and annotation data.

Carbon S, Ireland A, Mungall CJ, Shu S, Marshall B, Lewis S; AmiGO Hub.; Web Presence Working Group..

Bioinformatics. 2009 Jan 15;25(2):288-9. doi: 10.1093/bioinformatics/btn615.

13.

A workflow for mutation extraction and structure annotation.

Kanagasabai R, Choo KH, Ranganathan S, Baker CJ.

J Bioinform Comput Biol. 2007 Dec;5(6):1319-37.

PMID:
18172931
14.

PIGOK: Linking protein identity to gene ontology and function.

Jacob RJ, Cramer R.

J Proteome Res. 2006 Dec;5(12):3429-32.

PMID:
17137344
15.

GS2: an efficiently computable measure of GO-based similarity of gene sets.

Ruths T, Ruths D, Nakhleh L.

Bioinformatics. 2009 May 1;25(9):1178-84. doi: 10.1093/bioinformatics/btp128.

16.

The use of gene ontology evidence codes in preventing classifier assessment bias.

Rogers MF, Ben-Hur A.

Bioinformatics. 2009 May 1;25(9):1173-7. doi: 10.1093/bioinformatics/btp122.

17.

The Gene Ontology (GO) database and informatics resource.

Harris MA, Clark J, Ireland A, Lomax J, Ashburner M, Foulger R, Eilbeck K, Lewis S, Marshall B, Mungall C, Richter J, Rubin GM, Blake JA, Bult C, Dolan M, Drabkin H, Eppig JT, Hill DP, Ni L, Ringwald M, Balakrishnan R, Cherry JM, Christie KR, Costanzo MC, Dwight SS, Engel S, Fisk DG, Hirschman JE, Hong EL, Nash RS, Sethuraman A, Theesfeld CL, Botstein D, Dolinski K, Feierbach B, Berardini T, Mundodi S, Rhee SY, Apweiler R, Barrell D, Camon E, Dimmer E, Lee V, Chisholm R, Gaudet P, Kibbe W, Kishore R, Schwarz EM, Sternberg P, Gwinn M, Hannick L, Wortman J, Berriman M, Wood V, de la Cruz N, Tonellato P, Jaiswal P, Seigfried T, White R; Gene Ontology Consortium..

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D258-61.

18.

Taxonomy-based partitioning of the Gene Ontology.

Kuśnierczyk W.

J Biomed Inform. 2008 Apr;41(2):282-92.

19.

PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data.

Bréhélin L, Dufayard JF, Gascuel O.

BMC Bioinformatics. 2008 Oct 16;9:440. doi: 10.1186/1471-2105-9-440.

20.

PhenoGO: assigning phenotypic context to gene ontology annotations with natural language processing.

Lussier Y, Borlawsky T, Rappaport D, Liu Y, Friedman C.

Pac Symp Biocomput. 2006:64-75.

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