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Items: 1 to 20 of 102

1.

Differential allelic expression in the human genome: a robust approach to identify genetic and epigenetic cis-acting mechanisms regulating gene expression.

Serre D, Gurd S, Ge B, Sladek R, Sinnett D, Harmsen E, Bibikova M, Chudin E, Barker DL, Dickinson T, Fan JB, Hudson TJ.

PLoS Genet. 2008 Feb 29;4(2):e1000006. doi: 10.1371/journal.pgen.1000006.

2.

Computational analysis of whole-genome differential allelic expression data in human.

Wagner JR, Ge B, Pokholok D, Gunderson KL, Pastinen T, Blanchette M.

PLoS Comput Biol. 2010 Jul 8;6(7):e1000849. doi: 10.1371/journal.pcbi.1000849.

3.

Detection of allelic imbalance in gene expression using pyrosequencing.

Wang H, Elbein SC.

Methods Mol Biol. 2007;373:157-76.

PMID:
17185765
4.

Allelic expression imbalance of the schizophrenia susceptibility gene CHI3L1: evidence of cis-acting variation and tissue specific regulation.

Hill MJ, Kenny E, Roche S, Morris DW, Corvin A, Hawi Z, Gill M, Anney RJ.

Psychiatr Genet. 2011 Dec;21(6):281-6. doi: 10.1097/YPG.0b013e328348045b.

PMID:
21642896
5.

Targeted screening of cis-regulatory variation in human haplotypes.

Verlaan DJ, Ge B, Grundberg E, Hoberman R, Lam KC, Koka V, Dias J, Gurd S, Martin NW, Mallmin H, Nilsson O, Harmsen E, Dewar K, Kwan T, Pastinen T.

Genome Res. 2009 Jan;19(1):118-27. doi: 10.1101/gr.084798.108. Epub 2008 Oct 29.

6.

Next-generation DNA sequencing-based assay for measuring allelic expression imbalance (AEI) of candidate neuropsychiatric disorder genes in human brain.

Xu X, Wang H, Zhu M, Sun Y, Tao Y, He Q, Wang J, Chen L, Saffen D.

BMC Genomics. 2011 Oct 20;12:518. doi: 10.1186/1471-2164-12-518.

7.

Analyzing allele specific RNA expression using mixture models.

Lu R, Smith RM, Seweryn M, Wang D, Hartmann K, Webb A, Sadee W, Rempala GA.

BMC Genomics. 2015 Aug 1;16:566. doi: 10.1186/s12864-015-1749-0.

8.

Validating discovered Cis-acting regulatory genetic variants: application of an allele specific expression approach to HapMap populations.

Campino S, Forton J, Raj S, Mohr B, Auburn S, Fry A, Mangano VD, Vandiedonck C, Richardson A, Rockett K, Clark TG, Kwiatkowski DP.

PLoS One. 2008;3(12):e4105. doi: 10.1371/journal.pone.0004105. Epub 2008 Dec 31.

9.

A survey of genetic and epigenetic variation affecting human gene expression.

Pastinen T, Sladek R, Gurd S, Sammak A, Ge B, Lepage P, Lavergne K, Villeneuve A, Gaudin T, Brändström H, Beck A, Verner A, Kingsley J, Harmsen E, Labuda D, Morgan K, Vohl MC, Naumova AK, Sinnett D, Hudson TJ.

Physiol Genomics. 2004 Jan 15;16(2):184-93.

PMID:
14583597
10.

An intronic PICALM polymorphism, rs588076, is associated with allelic expression of a PICALM isoform.

Parikh I, Medway C, Younkin S, Fardo DW, Estus S.

Mol Neurodegener. 2014 Aug 29;9:32. doi: 10.1186/1750-1326-9-32.

11.

SNP-based large-scale identification of allele-specific gene expression in human B cells.

Song MY, Kim HE, Kim S, Choi IH, Lee JK.

Gene. 2012 Feb 10;493(2):211-8. doi: 10.1016/j.gene.2011.11.058. Epub 2011 Dec 8.

PMID:
22178530
12.

Genotype-based test in mapping cis-regulatory variants from allele-specific expression data.

Lefebvre JF, Vello E, Ge B, Montgomery SB, Dermitzakis ET, Pastinen T, Labuda D.

PLoS One. 2012;7(6):e38667. doi: 10.1371/journal.pone.0038667. Epub 2012 Jun 7.

13.

Genome-wide analysis of allelic expression imbalance in human primary cells by high-throughput transcriptome resequencing.

Heap GA, Yang JH, Downes K, Healy BC, Hunt KA, Bockett N, Franke L, Dubois PC, Mein CA, Dobson RJ, Albert TJ, Rodesch MJ, Clayton DG, Todd JA, van Heel DA, Plagnol V.

Hum Mol Genet. 2010 Jan 1;19(1):122-34. doi: 10.1093/hmg/ddp473.

14.

Powerful identification of cis-regulatory SNPs in human primary monocytes using allele-specific gene expression.

Almlöf JC, Lundmark P, Lundmark A, Ge B, Maouche S, Göring HH, Liljedahl U, Enström C, Brocheton J, Proust C, Godefroy T, Sambrook JG, Jolley J, Crisp-Hihn A, Foad N, Lloyd-Jones H, Stephens J, Gwilliam R, Rice CM, Hengstenberg C, Samani NJ, Erdmann J, Schunkert H, Pastinen T, Deloukas P, Goodall AH, Ouwehand WH, Cambien F, Syvänen AC.

PLoS One. 2012;7(12):e52260. doi: 10.1371/journal.pone.0052260. Epub 2012 Dec 26.

15.

Large-scale profiling and identification of potential regulatory mechanisms for allelic gene expression in colorectal cancer cells.

Lee RD, Song MY, Lee JK.

Gene. 2013 Jan 1;512(1):16-22. doi: 10.1016/j.gene.2012.10.001. Epub 2012 Oct 10.

PMID:
23064046
16.

Allelic skewing of DNA methylation is widespread across the genome.

Schalkwyk LC, Meaburn EL, Smith R, Dempster EL, Jeffries AR, Davies MN, Plomin R, Mill J.

Am J Hum Genet. 2010 Feb 12;86(2):196-212. doi: 10.1016/j.ajhg.2010.01.014.

17.

Genome-wide detection of allelic gene expression in hepatocellular carcinoma cells using a human exome SNP chip.

Park YM, Cheong HS, Lee JK.

Gene. 2014 Nov 10;551(2):236-42. doi: 10.1016/j.gene.2014.09.001. Epub 2014 Sep 2.

PMID:
25192659
18.

Cis-acting regulatory variation in the human genome.

Pastinen T, Hudson TJ.

Science. 2004 Oct 22;306(5696):647-50. Review.

PMID:
15499010
19.

Promoter polymorphisms and allelic imbalance in ABCB1 expression.

Loeuillet C, Weale M, Deutsch S, Rotger M, Soranzo N, Wyniger J, Lettre G, Dupré Y, Thuillard D, Beckmann JS, Antonarakis SE, Goldstein DB, Telenti A.

Pharmacogenet Genomics. 2007 Nov;17(11):951-9.

PMID:
18075465
20.

Allelic mRNA expression of X-linked monoamine oxidase a (MAOA) in human brain: dissection of epigenetic and genetic factors.

Pinsonneault JK, Papp AC, Sadée W.

Hum Mol Genet. 2006 Sep 1;15(17):2636-49. Epub 2006 Aug 7.

PMID:
16893905

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