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Items: 1 to 20 of 93

1.

Analysis of gene-expression data using J-Express.

Stavrum AK, Petersen K, Jonassen I, Dysvik B.

Curr Protoc Bioinformatics. 2008 Mar;Chapter 7:Unit 7.3. doi: 10.1002/0471250953.bi0703s21.

PMID:
18428687
2.

An overview of Spotfire for gene-expression studies.

Kaushal D, Naeve CW.

Curr Protoc Bioinformatics. 2004 Sep;Chapter 7:Unit 7.7. doi: 10.1002/0471250953.bi0707s6. Review.

PMID:
18428733
3.

Cross-species and cross-platform gene expression studies with the Bioconductor-compliant R package 'annotationTools'.

Kuhn A, Luthi-Carter R, Delorenzi M.

BMC Bioinformatics. 2008 Jan 17;9:26. doi: 10.1186/1471-2105-9-26.

4.

PROTEIOS: an open source proteomics initiative.

Gärdén P, Alm R, Häkkinen J.

Bioinformatics. 2005 May 1;21(9):2085-7. Epub 2005 Feb 3.

PMID:
15691852
5.

GARBAN: genomic analysis and rapid biological annotation of cDNA microarray and proteomic data.

Martínez-Cruz LA, Rubio A, Martínez-Chantar ML, Labarga A, Barrio I, Podhorski A, Segura V, Sevilla Campo JL, Avila MA, Mato JM.

Bioinformatics. 2003 Nov 1;19(16):2158-60.

PMID:
14594726
6.

BioMart and Bioconductor: a powerful link between biological databases and microarray data analysis.

Durinck S, Moreau Y, Kasprzyk A, Davis S, De Moor B, Brazma A, Huber W.

Bioinformatics. 2005 Aug 15;21(16):3439-40.

PMID:
16082012
7.

lumi: a pipeline for processing Illumina microarray.

Du P, Kibbe WA, Lin SM.

Bioinformatics. 2008 Jul 1;24(13):1547-8. doi: 10.1093/bioinformatics/btn224. Epub 2008 May 8.

PMID:
18467348
8.

EMMA: a platform for consistent storage and efficient analysis of microarray data.

Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Pühler A, Meyer F.

J Biotechnol. 2003 Dec 19;106(2-3):135-46.

PMID:
14651856
9.

AVA: visual analysis of gene expression microarray data.

Zhou Y, Liu J.

Bioinformatics. 2003 Jan 22;19(2):293-4.

PMID:
12538256
10.

Analyzing microarray data using CLANS.

Frickey T, Weiller G.

Bioinformatics. 2007 May 1;23(9):1170-1. Epub 2007 Mar 7.

PMID:
17344239
11.

Micro-Analyzer: automatic preprocessing of Affymetrix microarray data.

Guzzi PH, Cannataro M.

Comput Methods Programs Biomed. 2013 Aug;111(2):402-9. doi: 10.1016/j.cmpb.2013.04.006. Epub 2013 May 31.

PMID:
23731720
12.

CellMontage: similar expression profile search server.

Fujibuchi W, Kiseleva L, Taniguchi T, Harada H, Horton P.

Bioinformatics. 2007 Nov 15;23(22):3103-4. Epub 2007 Sep 25. Erratum in: Bioinformatics. 2008 Jun;24(9):1223.

PMID:
17895274
13.

pFind: a novel database-searching software system for automated peptide and protein identification via tandem mass spectrometry.

Li D, Fu Y, Sun R, Ling CX, Wei Y, Zhou H, Zeng R, Yang Q, He S, Gao W.

Bioinformatics. 2005 Jul 1;21(13):3049-50. Epub 2005 Apr 7.

PMID:
15817687
14.

SEGS: search for enriched gene sets in microarray data.

Trajkovski I, Lavrac N, Tolar J.

J Biomed Inform. 2008 Aug;41(4):588-601. doi: 10.1016/j.jbi.2007.12.001. Epub 2007 Dec 15.

15.

Loading and preparing data for analysis in spotfire.

Kaushal D, Naeve CW.

Curr Protoc Bioinformatics. 2004 Sep;Chapter 7:Unit 7.8. doi: 10.1002/0471250953.bi0708s6.

PMID:
18428734
16.

2HAPI: a microarray data analysis system.

Fink JL, Drewes S, Patel H, Welsh JB, Masys DR, Corbeil J, Gribskov M.

Bioinformatics. 2003 Jul 22;19(11):1443-5.

PMID:
12874061
17.

Gene-Ontology-based clustering of gene expression data.

Adryan B, Schuh R.

Bioinformatics. 2004 Nov 1;20(16):2851-2. Epub 2004 Apr 29.

PMID:
15117760
18.

OntologyTraverser: an R package for GO analysis.

Young A, Whitehouse N, Cho J, Shaw C.

Bioinformatics. 2005 Jan 15;21(2):275-6. Epub 2004 Aug 27.

PMID:
15333457
19.

Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases.

Cavalieri D, Castagnini C, Toti S, Maciag K, Kelder T, Gambineri L, Angioli S, Dolara P.

Bioinformatics. 2007 Oct 1;23(19):2631-2. Epub 2007 Jun 28.

PMID:
17599938
20.

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